Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0677 ATGTTGTGTGCTTGTTCAGGGGAGCAATTCAAAATTGATGAGGCACCACAGTCACCAGAGTCATTGGCAACAAGGGATTTCTCTGCAGGTGGGTTTTCTTCAAGGACTGAAGATTGTGAATCCAAATTTGATGAAACCCAAGTAGAAGATGTTGAATCCACTCTAAAAGAAACTCTCTCATTAAACTATGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATATCAAAGAGGGAACTATGATGCTGCCCTTCAAGTATTTCAGGGAATTGAAATAAGTGTTTTAACCCCAAGGATGATAAGGGCTATTGCTGAAAGAACCAACCAAAGAAAACCACATTCTAAAGCATATACTTTGCTTCCTAATGTGATGTCAATGCATTCAGTAAACTTGCTTCTTGAGGCAATTCTGCTTAAAGCCAAATGCTTAGAGGAACTTGGGAGATACACTGATGCTGCAAAAGAATGCAGGATAATTCTAGATACAGTTGAATCTGCTTTTCCTAATGGAATGCCTGAGGGTATTCGTGAAGATTGGAAGTTGCAAGAAGTTCTCCACAGAGCATTGGAGTTGCTTCCAAATCTATCGATCAAGGCAGGCTGTCTAGACGAAGCTGTCACAGCTTATCGGCGGGTTCTAGTCAAGCCCTGGAATTTGGTGCCACTAAGGTTGGCCAGGGTACAAAAAGATTTAGCTACCACATTACTCTATGGTGGTTTTGAAGTGAACTTACCCTCTCAGTTGCAAGTGAAGAATCTAACAACACCTAATGGTAACATTGAAGAAGTCATACTTTTGCTATTGATACTATTGACAAAGATGGCAGTTCAGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACATTTGCATTTTCAACTACTGGTCTGTTTGAATCTTTGGCAGTTCATGTAGAGCAGATCCTTCCAGCCGTGTATGATCGAACCGAGAGATGGTACATTCTTGCTCTTTGTTACAGTGCAGCAGGACAAAATGAAGCAGCCTTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGGAAAGCATAGACCACATTTTCCTTCATTTATGCTTGGTGCCAAGTTGTGTTCCCCATATCCAAACCATGCCCGCGAAGGCATTCAATTTTCACGGGAAGTTATTGAACTAGCCAAGCATCAAAATGAACATTTTTTAGGTCAAGGCCAAAAGTTTCTTGGTATTTGCTATGGGGCCGCAGCTAGAACATCTGTACAGGATTATGAAAGGACTACATTTCAAAGAGAGTCTTTGAACTTTCTAAGTGATGCTGCTTTAATTGAAAACAATGATCCAGAAGTGATATTCAGCCTTAGTCTGGAAAATGCAGTTCAAAGAAATCTAGATGCAGCTTATGACAATATAATGATGTACTCGGGCGTGATGATTGGAAGCTCAAGAAGAGGTTGGAAACTGTTAGCACTCATAGTATCTGCACAGCAGCGGTTTAAGGATGCCGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGAGGATAGATCAGTTAGAACTTCTACCTTTGAAAGCTGTACTTCAAGTTGCTCAACAGAAACCCAAGCAAGCAGTAGAGACATACAGAATCCTGCTAGCACTAATTCAAGCAAAAAAGGAGCTTCGGCTTCAAGCTAAGGACTTCGATCAAGTAGAAGCATTTAGACATGAGGCATTAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAAGATTTGGCTACCATTTATGCAGATCATAGTTCTTCTCTTGATGCAAAAGCTTGTGTAGAAAAAGCCAAGTTAATAGAATTTTTCTCTCCTAGAAGTTGGCATATTACAGGGAAGCTGTTTGAAACCCAATCATTATACAAGGAGGCCTTTGTTTCCTTCTCAATCTCATTGTCAGTAGAACCTGATTACATTCCTAGTATCATCTCAACTGCACAACTGTTGATTAAACTTGGTATGCATTCCCTTCCACTTGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGAACCCACAAACCATGATGCATGGTTCAACCTTGGTTTGGTTTCTAAAACTGAAGGTTCATTACAACAAGCAGCAGATTTCTTTCAAGCTGCATATGAGCTAAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTGA 2148 0.4046 MLCACSGEQFKIDEAPQSPESLATRDFSAGGFSSRTEDCESKFDETQVEDVESTLKETLSLNYEEARALLGRLEYQRGNYDAALQVFQGIEISVLTPRMIRAIAERTNQRKPHSKAYTLLPNVMSMHSVNLLLEAILLKAKCLEELGRYTDAAKECRIILDTVESAFPNGMPEGIREDWKLQEVLHRALELLPNLSIKAGCLDEAVTAYRRVLVKPWNLVPLRLARVQKDLATTLLYGGFEVNLPSQLQVKNLTTPNGNIEEVILLLLILLTKMAVQEIDWDAEIMDHLTFAFSTTGLFESLAVHVEQILPAVYDRTERWYILALCYSAAGQNEAALNLLRKACGSSEGKHRPHFPSFMLGAKLCSPYPNHAREGIQFSREVIELAKHQNEHFLGQGQKFLGICYGAAARTSVQDYERTTFQRESLNFLSDAALIENNDPEVIFSLSLENAVQRNLDAAYDNIMMYSGVMIGSSRRGWKLLALIVSAQQRFKDAETIVDFALDEAGRIDQLELLPLKAVLQVAQQKPKQAVETYRILLALIQAKKELRLQAKDFDQVEAFRHEALTERKLEMEAWQDLATIYADHSSSLDAKACVEKAKLIEFFSPRSWHITGKLFETQSLYKEAFVSFSISLSVEPDYIPSIISTAQLLIKLGMHSLPLARSFLMNALRLEPTNHDAWFNLGLVSKTEGSLQQAADFFQAAYELKLSAPVQKFE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0677 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Lal8g0677 715 Pfam Tetratricopeptide repeat 677 706 IPR019734 GO:0005515
Lal8g0677 715 Pfam Tetratricopeptide repeat 318 345 IPR019734 GO:0005515
Lal8g0677 715 Gene3D Tetratricopeptide repeat domain 651 711 IPR011990 GO:0005515
Lal8g0677 715 Gene3D Tetratricopeptide repeat domain 39 349 IPR011990 GO:0005515
Lal8g0677 715 SUPERFAMILY TPR-like 65 353 IPR011990 GO:0005515
Lal8g0677 715 SUPERFAMILY TPR-like 564 706 IPR011990 GO:0005515
Lal8g0677 715 Gene3D Tetratricopeptide repeat domain 480 650 IPR011990 GO:0005515
Lal8g0677 715 PANTHER PROTEIN NPGR1 1 714 - -
Lal8g0677 715 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Lal8g0677 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Lal8g0677 715 SMART tpr_5 133 166 IPR019734 GO:0005515
Lal8g0677 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Lal8g0677 715 SMART tpr_5 606 639 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0677 Lal-Chr8 4780667 4788657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0677 1 714 Calmodulin-binding Proteins AT1G27460 56.407 0.0 802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0677 8 4780667 4788657 Lal8g0677 8 4780667 4788657 ECH
Lal8g0677 8 4780667 4788657 Lal21g0238 21 1577879 1581740 PCT
Lal21g0238 21 1577879 1581740 Lal8g0677 8 4780667 4788657 PCT