Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0671 ATGGAGTCTCTAGGAGCATTCCCTGATGGAGATTGGGATTACTTTCGTAGAATGTTTTTGAGTGAGGAGCACGATTTTTACTCTCAACAATTTCTTGACCAAAGTTCATCTCTGCAAGGGCAACATGATGAATTGAACATTGGAATGCAATCACCATTTTCGTCTGCTCCTGAAGCTGGTGAAAATGAGAGTGTGTTTTATTCCTTAGATGATCACAATTCAAGTTTGCAGTATATTTCTCAAGAAAGTAGTTATAGTAGCAATTGCAGTGGAGATAATGTGTTCATTAATCCGGGTCATACTAACAACTATTTTAGTTACCCTGATCATTATGTACTAGAAAATAACACTTCTTTATCCATGGATTTTTGCATGGATGAGAAAAATATTCTGACCTCTTTTTCCCCTTTGCTTTCTGACACTGTAATGGAAGATAATATCAACTTGAATGAAGATGAGGGAAGTGAGAGATTGGAGAACTATGATCACAGTCTAGTGGAATCTATTGTTCTTCCTACCAAAAGGAAGCTTGGTGTGCCAGAACTAGAGGTGCTTGCTGATGATAAAACAAACAACAAATTTGAGATGGGGAACAAAAAACCTCATCTTTCAAAAGATGTGCAAGGATGCATAAAAGATTCACGGTCCAAGATGAATAAAAAACTTGCCAAAAAGGAGGAGGAGGGAGAAGAGTTTAATACAAGATCAGATGGACACAACTCAAGTAGTAGCATCCTAGAAGATAATAATGCTTCTCAGGAAAATAGTGGAGAGGATACTTCAGGTTCTAAATCATCAACTCTTAACTCAAATGGAAAGACAAGAGCAAGTAGGGGATCCGCAACAGATCCCCAGAGTCTATATGCAAGGAAGAGAAGAGAGAGAATAAATGAGCGACTACAAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTAGATATAAGTACAATGCTTGAAGATGCAGTCAATTACGTGAAATTTCTGCAGCTCCAGATCAAGCTTTTAAGTTCTGATGATCTATGGATGTATGCTCCACTTACTTATAATGGACTTGGCATAGGATTCAATATCAACCTGAAGAATTCTCAACTATGA 1098 0.3752 MESLGAFPDGDWDYFRRMFLSEEHDFYSQQFLDQSSSLQGQHDELNIGMQSPFSSAPEAGENESVFYSLDDHNSSLQYISQESSYSSNCSGDNVFINPGHTNNYFSYPDHYVLENNTSLSMDFCMDEKNILTSFSPLLSDTVMEDNINLNEDEGSERLENYDHSLVESIVLPTKRKLGVPELEVLADDKTNNKFEMGNKKPHLSKDVQGCIKDSRSKMNKKLAKKEEEGEEFNTRSDGHNSSSSILEDNNASQENSGEDTSGSKSSTLNSNGKTRASRGSATDPQSLYARKRRERINERLQILQNLVPNGTKVDISTMLEDAVNYVKFLQLQIKLLSSDDLWMYAPLTYNGLGIGFNINLKNSQL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0671 365 MobiDBLite consensus disorder prediction 192 290 - -
Lal8g0671 365 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 363 - -
Lal8g0671 365 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 363 - -
Lal8g0671 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 344 IPR036638 GO:0046983
Lal8g0671 365 SMART finulus 286 335 IPR011598 GO:0046983
Lal8g0671 365 MobiDBLite consensus disorder prediction 236 284 - -
Lal8g0671 365 CDD bHLH_AtIND_like 281 343 - -
Lal8g0671 365 Gene3D - 279 337 IPR036638 GO:0046983
Lal8g0671 365 MobiDBLite consensus disorder prediction 192 235 - -
Lal8g0671 365 Pfam Helix-loop-helix DNA-binding domain 290 330 IPR011598 GO:0046983
Lal8g0671 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0671 Lal-Chr8 4744479 4746650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0671 61 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 41.720 2.83e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0671 HLH 2.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0671 8 4744479 4746650 Lal8g0671 8 4744479 4746650 ECH