Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0649 ATGGTTTCAACTAGATCGAACACCCTCACCATGTTCCTCCTTATATTAACTCTCTTAGCACTTTCATCAGCCATAGACATGTCCATAATCTCGTACGACAGAACCGACGATGAGGTAAAGGCCTTATACGAAGAGTGGCTAGTGAAGCATGGAAAGGTGTACAATGCGCTAGGAGAGAAGGAAAAACGGTTCGAGATATTTAAAGATAACCTTCGGTTCATTGACGAGAATCATATAAATGAGAACCGGACATACAAACTTGGGTTGAACCGGTTCGCTGATATGACAAATGAAGAGTACAGAGCTAAGTTCCTTGGAACTAGGATTGACCCTAATAGGAGGATGGCGAAGTTGAGAACAAGGAGCAATCGTTATGCGCCACGTGTCGGTGATAAGTTGCCAGACTCTGTTGATTGGAGGAAAGAAGGTGCTGTTCTTGGAGTCAAAGATCAAGGAAGCTGTGGGAGCTGTTGGGCCTTTGCAACAATAGCTGCTGTGGAAGGAATAAACAAGATTGTAACTGGTGAACTGATTTCACTATCCGAACAAGAGCTTGTGGATTGTGATAAATCATACAATCAAGGATGCAATGGTGGAGTTATGGACTATGCCTTTGAGTTCATCATAAAAAATGGTGGTATTGACTCTGAAAGTGATTATCCCTACAAAGCTGTTGATGCTACATGTGACCAATACAGGAAAAATGCTAAAGTTGTTGTAATTGATGAGTACGAAGATGTTCCTACATATGATGAGAAAGCCTTGCAAAAAGCTGTTGCAAATCAACCTGTGGCCATTGCTGTTGAAGGAGGTGGCAGGGAATTCCAGTTATATGAATCTGGTATATTTACAGGGAGATGTGGAACTGCATTAGATCATGGTGTTAATGCTGTTGGTTATGGTACAGAAAATGGTAAAGATTATTGGATTGTGAGGAATTCATGGGGTCCTAGCTGGGGAGAAGATGGTTACATCAGACTCGAGCGTAATCTAGCCAGTAGCAAAGCTGGCAAGTGTGGAATTGCGATTGAGGCATCTTATCCTGTTAAGAAGGGCCAAAATCCTCCGAAACCTGCACCATCGCCGCCTACACCTGTGCAGCCACCATCTGTCTGTGACAATTACTATACCTGTGCTGAGAGCACTACTTGTTGCTGTATCTTCGAGTTTGGAAACTCTTGCTTTGAGTGGGGATGTTGTCCTCTTGAGGGTGCTACCTGCTGTGAAGACCATTATAGTTGCTGCCCAAATGACTATCCCATTTGCAACGTTTATGCAGGAACTTGTCTTAAGAGCACAAACAACCCATTTGGAGTGAAGGCATTGAGGCGAACTCCAGCATTGCGCCGCAGTTCGGTTGCAGATGAAAACATGATAAGCAGTGCTTAA 1389 0.4356 MVSTRSNTLTMFLLILTLLALSSAIDMSIISYDRTDDEVKALYEEWLVKHGKVYNALGEKEKRFEIFKDNLRFIDENHINENRTYKLGLNRFADMTNEEYRAKFLGTRIDPNRRMAKLRTRSNRYAPRVGDKLPDSVDWRKEGAVLGVKDQGSCGSCWAFATIAAVEGINKIVTGELISLSEQELVDCDKSYNQGCNGGVMDYAFEFIIKNGGIDSESDYPYKAVDATCDQYRKNAKVVVIDEYEDVPTYDEKALQKAVANQPVAIAVEGGGREFQLYESGIFTGRCGTALDHGVNAVGYGTENGKDYWIVRNSWGPSWGEDGYIRLERNLASSKAGKCGIAIEASYPVKKGQNPPKPAPSPPTPVQPPSVCDNYYTCAESTTCCCIFEFGNSCFEWGCCPLEGATCCEDHYSCCPNDYPICNVYAGTCLKSTNNPFGVKALRRTPALRRSSVADENMISSA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0649 462 SUPERFAMILY Granulin repeat 369 403 - -
Lal8g0649 462 Gene3D Cysteine proteinases 27 351 - -
Lal8g0649 462 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 378 - -
Lal8g0649 462 SMART GRAN_2 372 429 IPR000118 -
Lal8g0649 462 Gene3D Granulin 369 432 IPR037277 -
Lal8g0649 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 308 327 IPR025661 -
Lal8g0649 462 CDD Peptidase_C1A 134 348 IPR039417 -
Lal8g0649 462 Pfam Papain family cysteine protease 133 349 IPR000668 GO:0006508|GO:0008234
Lal8g0649 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 291 301 IPR025660 -
Lal8g0649 462 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Lal8g0649 462 PRINTS Papain cysteine protease (C1) family signature 293 303 IPR000668 GO:0006508|GO:0008234
Lal8g0649 462 PRINTS Papain cysteine protease (C1) family signature 308 314 IPR000668 GO:0006508|GO:0008234
Lal8g0649 462 PANTHER CYSTEINE PROTEASE 24 378 - -
Lal8g0649 462 Pfam Granulin 383 430 IPR000118 -
Lal8g0649 462 SMART pept_c1 133 349 IPR000668 GO:0006508|GO:0008234
Lal8g0649 462 SUPERFAMILY Cysteine proteinases 35 349 IPR038765 -
Lal8g0649 462 Pfam Cathepsin propeptide inhibitor domain (I29) 43 100 IPR013201 -
Lal8g0649 462 SMART Inhibitor_I29_2 43 100 IPR013201 -
Lal8g0649 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0649 Lal-Chr8 4584723 4588983 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0649 8 4584723 4588983 Lal16g1362 16 9994691 9997384 ECH
Lal8g0649 8 4584723 4588983 Lal13g0406 13 2540039 2543481 ECH
Lal8g0649 8 4584723 4588983 Lal12g0411 12 2915140 2918372 ECH
Lal8g0649 8 4584723 4588983 Lal8g0649 8 4584723 4588983 ECH
Lal8g0649 8 4584723 4588983 Lal25g0597 25 4510527 4515859 LSH
Lal8g0649 8 4584723 4588983 Lal10g0829 10 15922210 15926620 LSH