Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0643 ATGATCAGAAGCAGAAGCGGAAGCTCTACAGAGAAGAGAAAGCAACAAAGAGAGAAACAAATGAAACCATACTTTGGAATAAGGATGAGAAAGTGGGGAAAGTGGGTGGCGGAGATAAGAGAACCAAACAAGAGGTCAAGAATTTGGTTGGGTTCTTACACCACCCCTATAGCCGCCGCACGCGCCTACGACACCGCCGTGTTCTACCTGAGGGGACCTTCACCTAGACTTAACTTTCCGGAGTTACTGTTTCAAGAGCAAGACGGCGACGTTTCGTTGAAGAGAGAGGATATGTCTGCTGATTCAATAAGGAAGAAAGCTACACAAGTTGGTGCTAGAGTTGATGCTTTGCAAACAGCTCTTCATGCCTCTTCCAAGAACAATTCTACTTCTACTTATTATTCTTCCCTGAAACCTGATTTGAACGAGTTTCCTAAACCTGAAGATGATTCCTTTGACCTTCAAGGTTGA 471 0.4459 MIRSRSGSSTEKRKQQREKQMKPYFGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSPRLNFPELLFQEQDGDVSLKREDMSADSIRKKATQVGARVDALQTALHASSKNNSTSTYYSSLKPDLNEFPKPEDDSFDLQG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0643 156 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Lal8g0643 156 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Lal8g0643 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 149 - -
Lal8g0643 156 MobiDBLite consensus disorder prediction 1 20 - -
Lal8g0643 156 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Lal8g0643 156 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Lal8g0643 156 PIRSF PTI6 2 155 IPR017392 GO:0003700
Lal8g0643 156 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Lal8g0643 156 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Lal8g0643 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 149 - -
Lal8g0643 156 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Lal8g0643 156 Pfam AP2 domain 26 72 IPR001471 GO:0003700|GO:0006355
Lal8g0643 156 MobiDBLite consensus disorder prediction 142 156 - -
Lal8g0643 156 MobiDBLite consensus disorder prediction 125 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0643 Lal-Chr8 4523317 4523787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0643 17 153 AP2-EREBP Transcription Factor Family AT2G23340 55.405 1.96e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal8g0643 AP2 1.5e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0643 8 4523317 4523787 Lal8g0643 8 4523317 4523787 ECH
Lal8g0643 8 4523317 4523787 Lal10g0822 10 15881169 15881615 LSH