Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0641 ATGGCACAAATTCAGGTTCAGCAACAGAGTTCTGTATCGTCTCCTCCTTCACAAAACGGTGTCGCTTCTGGTGCTCCGAACGCGTTCGTCGTAACAACGTCGTTGTACGTTGGGGATCTTGACTTTAATGTCAACGATTCGCAACTCTATGATTTGTTCAACCAGGTTGGACAAGTCGTTTCGGTTAGGGTGTGTCGCGATTTAACCACACACCGTTCACTCGGTTATGGTTATGTTAACTATAGTAACCCTCAGGATGCGGCAAGAGCATTGGATGTGTTGAATTTTACTCCACTGAATAACAAACCTATTAGGGTTATGTATTCTCATAGGGATCCTAGTATTCGCAAGAGTGGTACTGCGAATATTTTTATTAAGAATTTGGACAAGACAATTGATCACAAAGGCTTACATGATACCTTTTCTGCCTTTGGACAAATTCTTTCTTGCAAAGTATCAACTGATGCTTCTGGCCAGTCCAAAGGCTATGGTTTTGTTCAGTTTGACAGTGAAGAGGCTGCACATAATGCTATTGATAAGTTGAATGGCATGCTGTTGAATGATAAACAGGTGTATGTTGGTCACTTCCTAAGGAAGCAAGATAGAAACAATGCTCTCAGTAAGACGAAATTCAATAATGTCTATGTGAAAAACCTATCGGAGTCAGTGACAGACGATGACTTGAAGAAATTTTTTGGCGAATATGGGACCATCACTAGTGCTGTAGTAATGAGAGATGGTGATGGAAAAACTAAGTGTTTTGGTTTTGTCAACTTTGAAAACCCAGATGATGCAGCTAAAGCTGTTGAGTCACTCAACGGGAAGAAGTTTGAGGACAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCGGAACGAGAGCAAGAACTCAAAGGACGTTTTGAACAGAGTATAAAAGAGACTGTTGACAAATATCATGGTGTGAATTTGTATCTCAAGAATTTGGATGATACCATCAGTGATGAAAAGCTGAAAGAACTGTTCTCTGAGTTTGGTACAGTTACTTCATGCAAGGTTATGCGAGACCCAAGTGGAGTCAGCCGAGGATCAGGATTTGTTGCATTTTCAACCCCTTATGAAGCTTCTAGAGCTCTTGCGGCGATGAATGGTAAAATGATATCTGGCAAACCTCTATATGTTGCCCTTGCACAGAGAAAAGAAGAGCGGAGAGCAAGGCTACAGGCGCAATTTTCTCAAATGAGGCCTGTTTCAGTTACTCCTGTTGCACCTCGTATGCAACTATACCCTCCTGGTGCTCCTGGTTTAGGACAGCAATTTTTGTATGGTCAAGGACCCCCAGCCATGATTCCTCCACAACCTGGATTTGGCTACCAGCAGCAGCTTGTTCCTGGGATGAGACCTGGTGGTCCAATGCCAAGCTTCTTTTTACCAATGGTTCAGCAGGGCCAACAAGGCCAGCGCCCAGTTGGGCGCCGAGGAGCAGGTTCTGTGCAACAACCCCAGCAGCCAGTGCCAATTTTGCAACAGCAGATGCCAAGAGGACGTGTCTATCGTTACCCTCCTGGTCGCAACATGCAAGATGCCCCCCTGACAGGAGTTGGTGGTGGAATAATGTCAGTCCCTTATGATATAGGTGGTCTTCCAATCCGAGATGCTGTGGGGCAACCAATGCCCATTCAGGCCTTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGAACTATGCTCGGTGAAGCTCTGTACCCGCTCGTAGATCAGCTGGAACATGATGCAGCAGCTAAGGTTACAGGCATGCTTTTAGAGATGGACCAGCCTGAGGTATTGCACCTGATTGAGTCTCCCGATGCTCTGAAGGCTAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTGCACAACAGCAAGCTAACATACCCGCCGCTGATCAACTAGCCTCACTCTCTCTCAACGACAATCTTGTCTCTTAA 1956 0.4535 MAQIQVQQQSSVSSPPSQNGVASGAPNAFVVTTSLYVGDLDFNVNDSQLYDLFNQVGQVVSVRVCRDLTTHRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRVMYSHRDPSIRKSGTANIFIKNLDKTIDHKGLHDTFSAFGQILSCKVSTDASGQSKGYGFVQFDSEEAAHNAIDKLNGMLLNDKQVYVGHFLRKQDRNNALSKTKFNNVYVKNLSESVTDDDLKKFFGEYGTITSAVVMRDGDGKTKCFGFVNFENPDDAAKAVESLNGKKFEDKEWYVGKAQKKSEREQELKGRFEQSIKETVDKYHGVNLYLKNLDDTISDEKLKELFSEFGTVTSCKVMRDPSGVSRGSGFVAFSTPYEASRALAAMNGKMISGKPLYVALAQRKEERRARLQAQFSQMRPVSVTPVAPRMQLYPPGAPGLGQQFLYGQGPPAMIPPQPGFGYQQQLVPGMRPGGPMPSFFLPMVQQGQQGQRPVGRRGAGSVQQPQQPVPILQQQMPRGRVYRYPPGRNMQDAPLTGVGGGIMSVPYDIGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQANIPAADQLASLSLNDNLVS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0641 651 Gene3D - 302 405 IPR012677 -
Lal8g0641 651 Gene3D - 1 120 IPR012677 -
Lal8g0641 651 Gene3D - 198 301 IPR012677 -
Lal8g0641 651 CDD RRM1_I_PABPs 34 113 - -
Lal8g0641 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Lal8g0641 651 Gene3D - 121 195 IPR012677 -
Lal8g0641 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Lal8g0641 651 MobiDBLite consensus disorder prediction 1 20 - -
Lal8g0641 651 SUPERFAMILY PABC (PABP) domain 497 645 IPR036053 GO:0003723
Lal8g0641 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Lal8g0641 651 SUPERFAMILY RNA-binding domain, RBD 212 396 IPR035979 GO:0003676
Lal8g0641 651 SMART poly_2 564 627 IPR002004 GO:0003723
Lal8g0641 651 CDD RRM3_I_PABPs 211 290 - -
Lal8g0641 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Lal8g0641 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Lal8g0641 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Lal8g0641 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Lal8g0641 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Lal8g0641 651 PANTHER RNA BINDING PROTEIN 24 634 - -
Lal8g0641 651 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676
Lal8g0641 651 SMART rrm2_1 34 107 IPR003954 GO:0003676
Lal8g0641 651 SMART rrm2_1 122 194 IPR003954 GO:0003676
Lal8g0641 651 SMART rrm2_1 316 388 IPR003954 GO:0003676
Lal8g0641 651 SMART rrm2_1 213 285 IPR003954 GO:0003676
Lal8g0641 651 Gene3D - 548 631 - -
Lal8g0641 651 CDD RRM4_I_PABPs 314 392 - -
Lal8g0641 651 CDD RRM2_I_PABPs 119 195 IPR045305 -
Lal8g0641 651 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Lal8g0641 651 PANTHER POLYADENYLATE-BINDING PROTEIN 24 634 - -
Lal8g0641 651 SMART rrm1_1 122 194 IPR000504 GO:0003723
Lal8g0641 651 SMART rrm1_1 316 388 IPR000504 GO:0003723
Lal8g0641 651 SMART rrm1_1 213 285 IPR000504 GO:0003723
Lal8g0641 651 SMART rrm1_1 34 107 IPR000504 GO:0003723
Lal8g0641 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Lal8g0641 651 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 625 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0641 Lal-Chr8 4502340 4508398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0641 32 650 Eukaryotic Initiation Factors Gene Family AT1G49760 70.095 0.0 854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0641 8 4502340 4508398 Lal8g0641 8 4502340 4508398 ECH
Lal8g0641 8 4502340 4508398 Lal25g0591 25 4421474 4426515 LSH
Lal8g0641 8 4502340 4508398 Lal10g0821 10 15871794 15876720 LSH