LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0639	ATGCAAGGGCAGAGAAGTACAATTGGTTCCCTGCCTGAAACCTTAGAATTTGATTGTGGATCAACATCAAGTAACGCTACAGTTAATCCGCCAACTTACTGGAGTAATATGCAGAATCCTGCAGAAAACCACATACCTGAATATATACTTTCCCCTGGTGAGATTAACTCATCCTATGTGAATTATATAAACCAGGACTGGCAAAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCCGGTAACACACAGAATGAGGTTAACAACAATGAGCAGAAAAGAGAACTAGGATGGCCATCTTCAGTAAATGCTAGTGCTATATCTGGTCCAATACTAGAAAGGCGCTTCAGACCAGCCAATGCTCTTTCTCTGGACAATGTCATTACAAGTTCTATGCCTATGAACAGCTCCAATTCTCATTTGGTGTCCCAGAGTCTTAATTTAAATGCAAGCTTAGCAGATAGTGGCAGTGATAATAGCCATCACGTGGAACATCCTAACTTGCCCAAGTCTAGTGGACCAATGAATGAGCATATTCCACCTATTACTAGTTCTGGTTCTTTTATGCTTCCTCCTGGAAGTAACAGCTTTTTGGTTGAGGATATTGATGGTAGGCCAGGTTGTTCTCGAGACACTCGCCGTGTATCTCGTAAAAGGAAGGCTGTTGAACGAGACTTTGGACAATCTTCATATGCTGGAAGTTGTAGCTACAGTCAAAATAGAGATGGTATTGCTTGGAACACACTTCCTACTCAGAATTATGCAGGGAGCAGTTTTAGCAGATCTGCTTCAGCAGAACAGGTAAATGCAAGACTTGGCCTGAGTATGGGTAACGTTGTATCTGAAAGTATTCCTGATACAAATGTTGCAGGAAGTTCAGAAAACGTCCATAGAAATTGTCGTTTGAGGATAAATCCTCCTAACCAACAAAATTCCGTTTCTCCCATTGCATTCTCAAGTGACAGTGTGATTAGGAATACTGGTGTTTCTTCGTGCACTTCAATGTTGCAAAGGATTCATCCTGTCGATAATTCTCTGGACTTGAGGTCAGTACCACCAGTTGATACTATGACTCCTCAAAGCCAGCCCCTTCTAGTTCATGTTCCTGCTTTACCAAGGAATGCACAATCATTTAGGTGGAATGGTGGCTCTAGCTCAACAAACAACTATTCATCAAATTCAGTTATGAGTGCAGATAGGGATAATCTACCACATGAGGATGGTAGCTCGAGAAGTATGCCTAGAAACATTTTAGAACAACCAGTGTCTGTCCCTCCAACCAATTTGAGAAATTTGTTCCATAATCCAGCAATTAGAGCTTCGACTAGTGCAAATTTAAGTATTCCCGGACATGTTGCTTCATCACGACCAGGGTCAAATTCAGTTATCAATCCATCATCTGTCTCTCCGTGGGTTTCTCCTCCTGATCCTCAGCAGCGTTATCCACGCAGGTTAGCTGAATATGTTCGCTGGCCCTTGTTTTCTCCTGTTTCTGAGGCTGCTGGAACTCCAATCAACATTTATTCTTCCTTGCGCGGTCCTGCTACTTCATCTGCTTTGTCATCTGGGGTGGTACACCCGAGATCATCTTCATTGTTGGAGAGGCTAGGTGAAAGTGAATATGCAATTCCTCCTTCATTACGATCGTTATCTGTTGCCGGTGAAGGAAATGGTAGAATTGTATCTGAGCTCCGCAATGTGTTGGGCCTCATGCGTCGAGGTAGGAGCCTGCGACTTGAGGATGTTATGATGCTCAACCATTCAATGTTTCCTGGAATAGCTGATATTCATGATAGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAATTATTGGCTTTGGAAGAGCGCATTGGAAATGTTAGTACTGGGTTGAATGAAGAAACCATATTGAAACATTTGAAACAGAAGAAGTATTTAGTTGAAACAGGGTCTGAGCATGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTATAAGGATGGAGATGATATGGGATCGCTGGATTGCGGGCACGGTTTCCATTACGATTGTGTAAAACAATGGCTAACGCATAAGAATCTCTGCCCCATTTGTAAGACAAAAGGCTTGGCAACATGA	2112	0.428	MQGQRSTIGSLPETLEFDCGSTSSNATVNPPTYWSNMQNPAENHIPEYILSPGEINSSYVNYINQDWQNLSGWSLGEPSSGNTQNEVNNNEQKRELGWPSSVNASAISGPILERRFRPANALSLDNVITSSMPMNSSNSHLVSQSLNLNASLADSGSDNSHHVEHPNLPKSSGPMNEHIPPITSSGSFMLPPGSNSFLVEDIDGRPGCSRDTRRVSRKRKAVERDFGQSSYAGSCSYSQNRDGIAWNTLPTQNYAGSSFSRSASAEQVNARLGLSMGNVVSESIPDTNVAGSSENVHRNCRLRINPPNQQNSVSPIAFSSDSVIRNTGVSSCTSMLQRIHPVDNSLDLRSVPPVDTMTPQSQPLLVHVPALPRNAQSFRWNGGSSSTNNYSSNSVMSADRDNLPHEDGSSRSMPRNILEQPVSVPPTNLRNLFHNPAIRASTSANLSIPGHVASSRPGSNSVINPSSVSPWVSPPDPQQRYPRRLAEYVRWPLFSPVSEAAGTPINIYSSLRGPATSSALSSGVVHPRSSSLLERLGESEYAIPPSLRSLSVAGEGNGRIVSELRNVLGLMRRGRSLRLEDVMMLNHSMFPGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETILKHLKQKKYLVETGSEHEAEPCCVCQEEYKDGDDMGSLDCGHGFHYDCVKQWLTHKNLCPICKTKGLAT	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	449	469	-	-
	Lal8g0639	703	CDD	RING-H2_TTC3	655	697	-	-
	Lal8g0639	703	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	620	700	IPR013083	-
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	449	479	-	-
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	204	224	-	-
	Lal8g0639	703	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	1	702	IPR045191	GO:0061630
	Lal8g0639	703	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1	1	702	-	-
	Lal8g0639	703	ProSiteProfiles	Zinc finger RING-type profile.	656	697	IPR001841	-
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lal8g0639	703	Pfam	Ring finger domain	656	697	IPR001841	-
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	177	192	-	-
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	377	423	-	-
	Lal8g0639	703	SMART	ring_2	656	696	IPR001841	-
	Lal8g0639	703	SUPERFAMILY	RING/U-box	646	699	-	-
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	152	224	-	-
	Lal8g0639	703	MobiDBLite	consensus disorder prediction	377	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0639	Lal-Chr8	4482406	4489343	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g0639	303	703	C3H Transcription Factor Family	AT2G15530	40.281	5.40e-74	251

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal8g0639	8	4482406	4489343	Lal8g0639	8	4482406	4489343	ECH
	Lal8g0639	8	4482406	4489343	Lal25g0589	25	4394193	4401110	LSH
	Lal8g0639	8	4482406	4489343	Lal10g0820	10	15860942	15867302	LSH
	Lal8g0639	8	4482406	4489343	Lal21g0198	21	1311167	1316663	PCT
	Lal21g0198	21	1311167	1316663	Lal8g0639	8	4482406	4489343	PCT