Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0638 ATGGCTCTTCTCCTAGACAACTGTGAAGGTATTTTACTCTCTCTAGATTCACATAAATCAGTGCCTGCACCTTTCCTTAGCAAAACATACCAACTTGTTAACGACCCCAACACTGATCACATAGTCTCTTGGGGCGAAGATGACACCACCTTTGTTGTTTGGCGTCCTCCTGAGTTCGCTAGAGACCTTCTTCCCAACTATTTCAAGCACAACAATTTCTCTAGCTTTGTTCGTCAACTCAATACTTATGGTTTTAGAAAGGTTGTGCCGGATAGATGGGAGTTTGCAAACGAATTCTTCAAGAAAGGAGAGAAGCACTTGTTGTGTGAGATCCATAGAAGAAAAACAGTACATCCTCAACAAGTAACCATGAACCATCATCATCTTTCTTCTCCAATGGGATTCAACAACGTGCCAGGTTTCTTTCCCTTTCATGACCGAGTCAGCATATCTCCACCCACTGACTCGGATGAGTTACCAAGCTGGTGTGACTCGCCGTCCCTCACTTCTCCAACAGCCACAAACATAAGCAACTACAACAGTTCTGTCACTGCACTTTCTGAAGACAACGAAAGACTTAGGAGAAGCAACAACATACTCATGTCGGAACTCGCACACATGAAGAAACTCTACAATGACATAATCTACTTTGTTCAAAACCATGTTAAGCCTGTTGCTCCAAGCAATAACACTTACCCTTCTTTTCCACAACCGTCAGCTCCATCAATGATGCAAAGGCAAATGAATAACCAGGTTGAAGGGTGTTATAATTATTATTCAACTTACCCTAAGCAAAACTCTCCCACTAACACATCAAGGAGCTCCATTACAATTGTTGAACAGCCTGGTGGTAATAGCAGCTGCAAGACTAAGCTTTTTGGGGTATCACTTCAATCAAAGAAAAGGGTGCACACTGAGTATGGATCTAATGATCTTATTGATTACTCTGAAATGAATAACAAGACCCGTGTGGTGTTAGCAAAGGATGATGACTTGGGCTTGAATCTCATGCCTCCTAATCCCACTTTTTAG 1032 0.4215 MALLLDNCEGILLSLDSHKSVPAPFLSKTYQLVNDPNTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANEFFKKGEKHLLCEIHRRKTVHPQQVTMNHHHLSSPMGFNNVPGFFPFHDRVSISPPTDSDELPSWCDSPSLTSPTATNISNYNSSVTALSEDNERLRRSNNILMSELAHMKKLYNDIIYFVQNHVKPVAPSNNTYPSFPQPSAPSMMQRQMNNQVEGCYNYYSTYPKQNSPTNTSRSSITIVEQPGGNSSCKTKLFGVSLQSKKRVHTEYGSNDLIDYSEMNNKTRVVLAKDDDLGLNLMPPNPTF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0638 343 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0638 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 337 IPR027725 -
Lal8g0638 343 Gene3D - 17 116 IPR036388 -
Lal8g0638 343 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0638 343 PANTHER BNAC06G00310D PROTEIN 12 337 - -
Lal8g0638 343 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0638 343 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0638 343 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0638 343 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lal8g0638 343 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0638 Lal-Chr8 4467319 4468959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0638 1 337 HSF AT1G46264 55.313 2.03e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal8g0638 HSF_DNA-bind 8.5e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0638 8 4467319 4468959 Lal8g0638 8 4467319 4468959 ECH
Lal8g0638 8 4467319 4468959 Lal25g0588 25 4373107 4375554 LSH
Lal8g0638 8 4467319 4468959 Lal21g0195 21 1285385 1288001 PCT
Lal21g0195 21 1285385 1288001 Lal8g0638 8 4467319 4468959 PCT