Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0617 ATGCAACAATCCAACGCCTCTGATTCTTCATCACAACAACAACAGCAGCAGCAACAGCCACTGTCGGAGCAGCGGCAACCGAAACCGCCTCCACCTGTAGCGGTGGCACCGCAACAGTGGGTTCCGATGCAGTATCCGGCTATGGTAATGCCGCACCACATGTTGCCGCCTCAGCCTTATGCGCCGCCGCCACCTTACGTGCCTTACCATCACCAGTATCAGCACGTGCCGCACGTGACCACTCACCAGAATCATCATGGATCCAATAGCGGCGAGAATAAGACTATATGGGTCGGCGATTTGTATCACTGGATGGATGAAAACTATCTCCATCGATGTTTTGCTTCCACTGGCGAGATTTCCTCCATCAAAGTTATTCGCAATAAACATACTTGTCTGTCGGAGGGTTATGGATTTGTGGAATTTTATTCACATGCCACCGCTGAGAAAGTTTTACGGACTTACGGTGGAATTTTGATGCCTAATACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACGGGAGACAAGGGTTCAGATAATGTTCCTGATCTTTCCATTTTTGTAGGAGATTTAGCTTCAGATGTTACAGATAGTGTATTGCATGAAACATTTTCTACTAAATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGTCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTTAGGTTTGGAGATGATAATGAGAGGTCCCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCCAGAAAATCATCTGGCTATCAACAAGGAGGGCAGTCAAATGGCGTATCCAACCAATCAGAAGCGGATTCTACGAACACAACTATATTTGTTGGAGGAATCGACCCTAATGTTACAGATGAAGATCTTAGGAACTCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTTCAATTTGCTAACAGAAATAATGCTGAAGAAGCCTTGCAGAAGCTAAATGGTACAATGATCGGCAAGCAAACAGTTCGCCTTTCTTGGGGCCGCAATCCAGCTAATAAGCAGGCAATTTCTCTCTCTCGCTCATGCATACCCATTGTCATTTTTAGGATGGATTTCGGCAGCCCCTGGAATGGAGCGTATTATGGGGCGCCTGTTTATGATGGTTATGGATATGCCTTGCCGCCTCCTCACGACCCAAGAATATACGCTGCTGCTTATGCGGCTTACCCTGTTTATGGAGGCCACCAACAGCAAGTAAGCTGA 1308 0.4625 MQQSNASDSSSQQQQQQQQPLSEQRQPKPPPPVAVAPQQWVPMQYPAMVMPHHMLPPQPYAPPPPYVPYHHQYQHVPHVTTHQNHHGSNSGENKTIWVGDLYHWMDENYLHRCFASTGEISSIKVIRNKHTCLSEGYGFVEFYSHATAEKVLRTYGGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLASDVTDSVLHETFSTKYPSVKAAKVVFDVNTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGVSNQSEADSTNTTIFVGGIDPNVTDEDLRNSFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQAISLSRSCIPIVIFRMDFGSPWNGAYYGAPVYDGYGYALPPPHDPRIYAAAYAAYPVYGGHQQQVS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0617 435 Gene3D - 186 262 IPR012677 -
Lal8g0617 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 32 434 - -
Lal8g0617 435 SUPERFAMILY RNA-binding domain, RBD 281 369 IPR035979 GO:0003676
Lal8g0617 435 MobiDBLite consensus disorder prediction 263 287 - -
Lal8g0617 435 Gene3D - 93 173 IPR012677 -
Lal8g0617 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 364 IPR000504 GO:0003723
Lal8g0617 435 SUPERFAMILY RNA-binding domain, RBD 170 281 IPR035979 GO:0003676
Lal8g0617 435 SUPERFAMILY RNA-binding domain, RBD 61 174 IPR035979 GO:0003676
Lal8g0617 435 MobiDBLite consensus disorder prediction 1 23 - -
Lal8g0617 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Lal8g0617 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Lal8g0617 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 357 IPR000504 GO:0003723
Lal8g0617 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Lal8g0617 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Lal8g0617 435 SMART rrm1_1 95 170 IPR000504 GO:0003723
Lal8g0617 435 SMART rrm1_1 188 262 IPR000504 GO:0003723
Lal8g0617 435 SMART rrm1_1 293 360 IPR000504 GO:0003723
Lal8g0617 435 CDD RRM3_NGR1_NAM8_like 291 362 - -
Lal8g0617 435 MobiDBLite consensus disorder prediction 1 36 - -
Lal8g0617 435 Gene3D - 269 372 IPR012677 -
Lal8g0617 435 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 32 434 - -
Lal8g0617 435 MobiDBLite consensus disorder prediction 267 287 - -
Lal8g0617 435 CDD RRM2_SECp43_like 186 265 - -
Lal8g0617 435 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0617 Lal-Chr8 4300329 4304337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0617 96 370 Eukaryotic Initiation Factors Gene Family AT2G23350 29.021 2.82e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0617 8 4300329 4304337 Lal8g0617 8 4300329 4304337 ECH
Lal8g0617 8 4300329 4304337 Lal25g0572 25 4273467 4277212 LSH
Lal8g0617 8 4300329 4304337 Lal10g0801 10 15723276 15727120 LSH