LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0612	ATGAGAGGAAATGGCGACGAAAATTCCAGATCGTGGGTAGAAGACATTTACTGGACCCATTTCAAAGCCCTCCATTTCGCACAATTTCTCCGTACTGGTTTTGATCAACACCTTGTACTTCCCAAAACATTTTCAGATAATCTAAAGAAGTTGCCCGAAAATGTGGAACTTAGAGGTCCTAGTGGTGTTGTGTGGAATGTAGGACTGACAAGTAAAGATGATACAGTGTTTTTCATGAATGGCTGGCGACAATTTGTTAAAGATCACTCTTTGAAAGAGAATGATTTCCTGGTCTTCAAGTACAATGGCGAGTCACTGTTTGATGTTTTAGTATTTGATGGGGGGAGCTTCTGTGAGAAGGCAAGTTCTTATTTTGTTCGTAAGTGTGGGTATACTGAAAATGGGGGTGCCCGTTTGATCACTGGAGAAGTGACAGATGATTCTGTCCCAAAAGTTAATGCTCCTTCTAATGCTGGAGTCCAATGTGCTTCACCTGAGAAATCTGTGGATGGTAATGATCTCATGGTGTTGGAAGCTGTAACCCTCAAAACTCCTACTGAAAGAGCTTTTAATGCCGGTGTCGAATCTGCGTCCCCTGAGCAATTTATGGAAGCTGATGGAGTCACAGAACCCGCAGCAGTTTCCCCCCAAACTACTGGTAAAAGGACCAGGAAGCAACTTTATGTTGTTAAACCCATCCAGACTGTGCGCAGAAGAAGAACATCAAATGTTTCGAGTGCTAATCAGGAAATAGTTGACTTGGTGACTGATCCCGAACCTGCTTCTGGGAGTAAAAGTCGAACACGTGACATGTCTTATACTTCAAATAGAAGGCCTGTCACAGAAGATGAGATAAAAAATGCACTCGAGTTGGCCAAGGCAGCATGTACCACCGGCAGCTTGCACATAGTTATGCGACCAACACATGTATATAAGAGATTCTATGTGTCAATCCCTAATAAGTGGATATTTGAACATATCTCTCCAACATCTCAAAATGTGATATTACGCGTTGGTGGGACTGAATGGCTTGCCAAATACAGCCTCCATAATATTCGTCACACCGGTGGTCTTACTGGTGGGTGGAAACATTTCGCATTGGATAATAACCTGGAAGAGTTCGATGTGTGTGTGCTTGAACCGGCAGGCGAAATCAACAACACATTGATCCTAGATGTCAGCATTTTCAGAGTTGTTGAGGAGATTACTCCACTGGGTATGCTAGGAACCCCAGGGAAAAGGGGTAGGAAGAAGTAA	1257	0.4336	MRGNGDENSRSWVEDIYWTHFKALHFAQFLRTGFDQHLVLPKTFSDNLKKLPENVELRGPSGVVWNVGLTSKDDTVFFMNGWRQFVKDHSLKENDFLVFKYNGESLFDVLVFDGGSFCEKASSYFVRKCGYTENGGARLITGEVTDDSVPKVNAPSNAGVQCASPEKSVDGNDLMVLEAVTLKTPTERAFNAGVESASPEQFMEADGVTEPAAVSPQTTGKRTRKQLYVVKPIQTVRRRRTSNVSSANQEIVDLVTDPEPASGSKSRTRDMSYTSNRRPVTEDEIKNALELAKAACTTGSLHIVMRPTHVYKRFYVSIPNKWIFEHISPTSQNVILRVGGTEWLAKYSLHNIRHTGGLTGGWKHFALDNNLEEFDVCVLEPAGEINNTLILDVSIFRVVEEITPLGMLGTPGKRGRKK	418

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0612	418	CDD	B3_DNA	32	113	IPR003340	GO:0003677
	Lal8g0612	418	Pfam	B3 DNA binding domain	36	109	IPR003340	GO:0003677
	Lal8g0612	418	Pfam	B3 DNA binding domain	304	386	IPR003340	GO:0003677
	Lal8g0612	418	Gene3D	-	279	401	IPR015300	-
	Lal8g0612	418	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	250	404	IPR044837	-
	Lal8g0612	418	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	8	136	IPR044837	-
	Lal8g0612	418	ProSiteProfiles	B3 DNA-binding domain profile.	23	115	IPR003340	GO:0003677
	Lal8g0612	418	SUPERFAMILY	DNA-binding pseudobarrel domain	302	387	IPR015300	-
	Lal8g0612	418	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	8	136	-	-
	Lal8g0612	418	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	250	404	-	-
	Lal8g0612	418	ProSiteProfiles	B3 DNA-binding domain profile.	301	399	IPR003340	GO:0003677
	Lal8g0612	418	Gene3D	-	19	118	IPR015300	-
	Lal8g0612	418	SMART	B3_2	26	115	IPR003340	GO:0003677
	Lal8g0612	418	SMART	B3_2	301	399	IPR003340	GO:0003677
	Lal8g0612	418	MobiDBLite	consensus disorder prediction	239	279	-	-
	Lal8g0612	418	CDD	B3_DNA	304	397	IPR003340	GO:0003677
	Lal8g0612	418	SUPERFAMILY	DNA-binding pseudobarrel domain	23	113	IPR015300	-
	Lal8g0612	418	MobiDBLite	consensus disorder prediction	261	275	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0612	Lal-Chr8	4265027	4268307	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Lal8g0612		B3	2.6e-10	CL0405

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal8g0612	8	4265027	4268307	Lal25g0568	25	4214450	4223360	LSH
	Lal8g0612	8	4265027	4268307	Lal10g0796	10	15690527	15694224	LSH