Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0604 ATGGGTTGGCTTAGCAAAATATTTAAAGCCTCTGACCATAAGGTTTCAGAAGGGCATTATCATAATAATAATGCAAACTATAAAGACGCTGCGGATTCTTACACACCATCAACTTCAGGGGATGTTTGGCCCAAGAGCGACGATGAAGATATTGATCGTGCTATTGCACTATCTCTTGTCGAAGAAAATCAGAAAGGAAATGGTGTAAATGTCAGGGGGCTTGTCCCCAACGTTGTGTCATTCTCTGTCCCGGGCCAATCAGAATACTATAAATCACAATTAGAAGAAGATGAACAACTTGCCCGAGCCATAGAACAAAGCCTTATTGTCGAGTCTCCACCCAGAGCCAGATATGGAAATGAAAATATGCATCAACCGGTTCCATTGTATTTCCCAATGGGGTACAGGATTTGTGGTGGCTGCAATACTGAGATTGGTTATGGACGATATTTAAATTGCTTGAATACATTCTGGCATCCTGAATGTTTCCGTTGCCGTGCCTGCAACTTACCAATCTCTGATTATGAGATTCCGACAAACCATGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGATCCAGAAATATTGCCCTACTCATGAACATGATAATACCCCACGCTGTTGCAGCTGTGAGCGAATGGAGCCACGAGAGGCAGGATATATTGGTCTCAATGATGGCCGGAAACTCTGCTTAGAATGTCTGGACTCTGCCATTATGGATACTAATGAATGTCAACCCCTATATACTGATATACAAAAATTCTATGAAAGCCTAAATATGAAACTGGACCAGCAAGTTCCACTACTCTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAAGGGGAGAAGAATGGCCACTATCACATGCCTGAGACCAGAGGACTGTGCCTCTCAGAGGAACAAACTATCAGCTCAATTTCGAGACGGCCTAGACTTGGGACTGGAAATAGAGCAATAGACATGAGAACACAACCATACAAACTGACTCGACGCTGTGATGTGACTGCAATTCTCATTTTATTTGGTCTTCCAAGATTGCTTACTGGTTCAATCTTAGCTCATGAGATGATGCATGCATGGCTGCGACTTAGAGGTTATCAGACACTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAGCTATCTTCTGCATCTGGAAGCAACCTTTTATCAGCTTCGTCCTCGTCTGCATCGTATGCTTCTAGAAAAGGTAAAAGTCCTGCTTTTGAGAGGAAGCTTGGGGAGTTCTTCATGCACCAGATTGAATCTGATATTTCACCCATTTATGGAGATGGATTTAGGGCAGGTCAAATAGCAGTGCGTAAATATGGTTTACAAAAGACCCTTAACCATATCTGGATGACGGGTACTTTTCCATTTTGA 1419 0.4257 MGWLSKIFKASDHKVSEGHYHNNNANYKDAADSYTPSTSGDVWPKSDDEDIDRAIALSLVEENQKGNGVNVRGLVPNVVSFSVPGQSEYYKSQLEEDEQLARAIEQSLIVESPPRARYGNENMHQPVPLYFPMGYRICGGCNTEIGYGRYLNCLNTFWHPECFRCRACNLPISDYEIPTNHAGLIEYRAHPFWIQKYCPTHEHDNTPRCCSCERMEPREAGYIGLNDGRKLCLECLDSAIMDTNECQPLYTDIQKFYESLNMKLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTISSISRRPRLGTGNRAIDMRTQPYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLRGYQTLSQDVEEGICQVLAHMWLESELSSASGSNLLSASSSSASYASRKGKSPAFERKLGEFFMHQIESDISPIYGDGFRAGQIAVRKYGLQKTLNHIWMTGTFPF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0604 472 PANTHER PROTEIN DA1-LIKE 1 176 - -
Lal8g0604 472 PANTHER PROTEIN DA1-LIKE 177 472 - -
Lal8g0604 472 Gene3D - 43 117 - -
Lal8g0604 472 ProSiteProfiles LIM domain profile. 136 208 IPR001781 -
Lal8g0604 472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 95 114 IPR003903 -
Lal8g0604 472 CDD LIM_DA1 138 180 - -
Lal8g0604 472 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 163 - -
Lal8g0604 472 Gene3D Cysteine Rich Protein 132 207 - -
Lal8g0604 472 SMART uim 46 65 IPR003903 -
Lal8g0604 472 SMART uim 95 114 IPR003903 -
Lal8g0604 472 PANTHER PROTEIN DA1-RELATED 2 177 472 IPR045218 -
Lal8g0604 472 PANTHER PROTEIN DA1-RELATED 2 1 176 IPR045218 -
Lal8g0604 472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 46 65 IPR003903 -
Lal8g0604 472 Pfam Ubiquitin interaction motif 46 59 IPR003903 -
Lal8g0604 472 Pfam Ubiquitin interaction motif 95 108 IPR003903 -
Lal8g0604 472 SMART lim_4 137 212 IPR001781 -
Lal8g0604 472 Pfam LIM domain 138 180 IPR001781 -
Lal8g0604 472 Pfam Protein DA1 260 466 IPR022087 -
Lal8g0604 472 ProSitePatterns LIM zinc-binding domain signature. 138 172 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0604 Lal-Chr8 4183724 4191284 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal8g0604 DA1-like 1.6e-98 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0604 8 4183724 4191284 Lal8g0604 8 4183724 4191284 ECH