LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0575	ATGAGCTTAAGGATGTTGGAGAAAGCATTGGAAAATTTTATAGAAAAGGTGCAGAAGCCAAAGCATATGCACTGGCATGGAAAATCTCACATTGCTCCTGAAAGTTCCTTGCCACCACCACCACCACGGTCGCCACCATCATCATTATCAATCATAGTGAATGAGCAAAGTAGGTGGGCTAACTTACCACCTGAGTTGTTACTAGACATATTTCAAAGGGTGGAAGCCAGTGAAACTTCCTGGCCTGCAAGGAGAGTAGTTGTAGCATGTGCCTCAGTTTGTAGGTCATGGAAGGAGATAACATACAGTGTGGTCAAGACATTAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTGAAGCAGCCTGGTCCAAGAGATGCTCCAATCCAGTGTTTTATTAAGAGAGAAAGGGTGACTTCAACATATCATTTATATCTAGGTCTGAGCCCAGCGCTTACTTGTGATATGAGCAAAATGCTATTGGTAGCAAAGAAGATTAGAAGGGCAACATGCACAGAATTTTTATTATCGTTAGTTCCCGATGATTTCTCTCGAGCTAGCAATACTTACATCGGAAAGCTAAGGTCTAATTTTCTGGGAACCAAGTTCACAATCATGGATGGTGAGCCCCCTCATGATTTTGCAATTCCATTAAATTGCAAGTTGCAGCAAAGTGTCCATTTGAAGCCGTTACTTCCAAGAGTTGCTGCAGCTAACTATAATGTGGGCACAATATCTTATGAACTCAATGTTCTTCGTACAAGAGGTCCAAGGAGAATGTGTTGTACAATGCACTTGATCCCCATATCTGCAATCCAAGAAGGAGGCACTGCCCCTACTCCTTTGAAGTTTACCAATTGCTATAACGAGCATGCATCTACCACACTTATTTCGAAAGGAAAGAAGCCAAGAGTTGAATTTGGTTCAGCTGGCACTGATGATAGTCCAGGATCAACCCCAAATGCAAGGGAACCACTGATTTTGAAAAACAAAGCACCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGGGTTACAGTGGCCTCAGTGAAGAACTTCCAGCTTGTAGCAGCCGCAGAACCTTCCCAAAATGTAGCAGTGGCAGAACAAGAGAAAGTGATACTACAATTTGGAAAAATTGGGAAAGACATATTCACCATGGATTACCGATATCCCCTTTCTGCATTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACAAAACCAACTTGTGAATGA	1260	0.427	MSLRMLEKALENFIEKVQKPKHMHWHGKSHIAPESSLPPPPPRSPPSSLSIIVNEQSRWANLPPELLLDIFQRVEASETSWPARRVVVACASVCRSWKEITYSVVKTLEQCGWLTFPISLKQPGPRDAPIQCFIKRERVTSTYHLYLGLSPALTCDMSKMLLVAKKIRRATCTEFLLSLVPDDFSRASNTYIGKLRSNFLGTKFTIMDGEPPHDFAIPLNCKLQQSVHLKPLLPRVAAANYNVGTISYELNVLRTRGPRRMCCTMHLIPISAIQEGGTAPTPLKFTNCYNEHASTTLISKGKKPRVEFGSAGTDDSPGSTPNAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQNVAVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPTCE	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0575	419	MobiDBLite	consensus disorder prediction	303	325	-	-
	Lal8g0575	419	PRINTS	Tubby superfamily signature	175	191	IPR000007	-
	Lal8g0575	419	PRINTS	Tubby superfamily signature	191	215	IPR000007	-
	Lal8g0575	419	PRINTS	Tubby superfamily signature	240	267	IPR000007	-
	Lal8g0575	419	PRINTS	Tubby superfamily signature	329	346	IPR000007	-
	Lal8g0575	419	PRINTS	Tubby superfamily signature	347	363	IPR000007	-
	Lal8g0575	419	PRINTS	Tubby superfamily signature	376	395	IPR000007	-
	Lal8g0575	419	PRINTS	Tubby superfamily signature	397	419	IPR000007	-
	Lal8g0575	419	PANTHER	TUBBY-RELATED	6	419	-	-
	Lal8g0575	419	PANTHER	TUBBY-LIKE F-BOX PROTEIN	6	419	-	-
	Lal8g0575	419	Gene3D	Tubby Protein; Chain A	117	419	IPR025659	-
	Lal8g0575	419	SUPERFAMILY	F-box domain	56	123	IPR036047	GO:0005515
	Lal8g0575	419	Pfam	F-box domain	59	101	IPR001810	GO:0005515
	Lal8g0575	419	SUPERFAMILY	Tubby C-terminal domain-like	109	419	IPR025659	-
	Lal8g0575	419	Pfam	Tub family	120	414	IPR000007	-
	Lal8g0575	419	ProSitePatterns	Tub family signature 1.	347	360	IPR018066	-
	Lal8g0575	419	MobiDBLite	consensus disorder prediction	28	48	-	-
	Lal8g0575	419	Gene3D	-	54	107	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0575	Lal-Chr8	3994476	4000840	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Lal8g0575		Tub	4.6e-102	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal8g0575	8	3994476	4000840	Lal8g0575	8	3994476	4000840	ECH
	Lal8g0575	8	3994476	4000840	Lal10g0850	10	16050554	16053287	LSH