Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0546 ATGGGTTCCGTAGAAGAAAAGATTAATAAAACTGGAGTAGTTGGAATTGGAGTTGGAGGAGTTGTTGGGGGTCAAACTCTATCTGCTGATATGAAACTCTTGAAAGAAATGCAGGAACATTGTGGGGCCAGAAAGGCTTTAAATTCAGAGTTGTGGCATGCTTGTGCAGGACCTCTTGTATCTTTGCCACAGGCAGGGACTCTTGTGTATTACTTTCCTCAGGGACACAGTGAGCAGGTAGCAGTTTCCACTAGAAGAACAGCAACTTCCCAGATTCCAAACTATCCAAATCTTCCATCTCAGTTGCTGTGCCAAGTTCAAAATGTCACACTTCATGCAGACAAAGAAACTGATGAAATCTATGCTCAAATGAGTCTTCAACCACTGAATTCTGAAAAAGATGTATTTCCTGTATCTGATTTTGGGATAAAGCATAGTAAACATCCCAGTGAGTTTTTCTGCAAAACCTTGACTGCTAGTGATACAAGCACACATGGTGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCGTTGGACTACACAACGCAACCCCCATCCCAAGAACTTGTTGTCCGTGATTTGCATGATCATACGTGGACATTTCGACATATATATCGTGGTCAGCCAAAGAGACACCTTCTCACAACAGGATGGAGTTTATTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTCCTTTTTATCAGGGATGAGAAATCGCAACTGCGAGTTGGTGTGAGGCGTGTTAACCGCCAACAGTCAACACTGCCATCATCAGTACTTTCCGCTGATAGCATGCACATTGGCGTACTTGCTGCTGCAGCTCATGCTGCTGCTAATGGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTGGCAAAATACCGAAAAGCTGTATTTGGGACCCAGCTCTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGTATTGTAGTTGGTGTAAGTGACTTGGATCCTTTAAGGTGGCCTGGTTCTAAGTGGCGAAATGTTCAGGTGGAGTGGGATGAGCCAGGTTGTGGTGATAAGCAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCTGAAAGTCTTTTTATCTTTCCGTCTTTGGCTTCAGGTCTTAAAAGGCCATTACAATCTGGATTTTTGGAAAATGAGTGGGGCAATTTGATAAGAAGACCTTTTATAAGAGTTCCTGAAAATGGAACATTGGAGCTCCCGAATTCAATATCAAATCTCTACTCAGAATACATGATGAAAATGGCTTACAAACCTGAACTTATTAACAACAATGTAGCCTTTTTATCTGCCATGCAACAAGAATCTGCTGCTACAAGAGATCCCTTAGAGATGAAGACAACATTGGCACCAGAGAGCCATAAACATCTTGCCAGTTCAGGAAGCATGCAACCGAAAAATGTGAATTCTCAATCTGTCCCTGACCAATCTAATGTCTTAAACATGCATTCAATGTCGAAAAGTGATCATCAACCTGCTAAATTGCACCCACTTGCCAAAAATGATAATAATCTGTCTTCTGGTACAGTTATTGATACACCAAAGTTAGAATCGGAGGTGTTAACTGATAACATGTTTGACCTCCCTTCCATTAATGGCAGTAGTAACATTGAAAAAATGGCTGAAAATCCTGTTATTTCTCAAAACCTTGCTAGCCCAATGACTTTCCTCAATCAAAACCAGAATACATTACTGTGTCAATCTAACCCATGGCCGATGCAGCCTCAGATAGAATCATCTACATCTCATCATCAACTGGTTGATGTGTCTCAATCTGATCCTGGTTTTGTGAGTGGTATGTTTCCTCAACTAGACATCGATGAATTGATGATGTACTCTTCCTGCCAACCTTTATCAGATTTGCAAGAACATACCGCGCTCCAAACTCAAGCAATGAATTCCCCTTTACCTCCAATGAGCCAAGAAATATGGGATCATTATGTCAAGAATTTCAAGTTTTCATTTCCGACTGATCAGCTAACATCGATGTATCAGCCAGGGATGTATGGCCTAAATGGTATATCTAGTTCAAACAATATGAAGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAAATTTGTGTCAATGTAGATGTTAGTAACAGTGTAAGTACCACCACTATGGTTGATCCTTCTACTGCAAGTACCATTTTGGATGAGTTTTGCACCTTGAAAGACAAGGATTTTCAGAATCAACCAGATTGCATGGTGGGAAACTTAAGTTCCAGCCAGGATGTCCAGTCTCAGATAACCACAGCAAGCCTAGCAGAGTCACATGCTTTTAACTCCGGTGGTACATCATCGAGCCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAAAAACTCCTGGGAGCAAATAGTTCCACCTATGCGAACTTACACGAAGGTGCAAAAGGCAGGTTCTGTCGGAAGATCCATTGATGTCACCACGTTCAAGAACTATGAGGAGCTGATCAGCGCGATTGAATGCATGTTTGGACTCTACGGTCTTCTGAATGATACCAAAGGTTCTGGATGGAAACTAGTATATGTAGATTATGAGAGTGATGTTTTACTTGTTGGAGATGATCCATGGGAAGAATTTGTGGGGTGTGTCCGATGCATAAGAATTCTATCGCCTTCGGAAGTTAAGCAGATGAGTGAGGAAGGGATGAAGCTTCTAAACAGTGGTGCCTTGCAAGGGATCAATGGTTAG 2787 0.4212 MGSVEEKINKTGVVGIGVGGVVGGQTLSADMKLLKEMQEHCGARKALNSELWHACAGPLVSLPQAGTLVYYFPQGHSEQVAVSTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKDVFPVSDFGIKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTTQPPSQELVVRDLHDHTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQSTLPSSVLSADSMHIGVLAAAAHAAANGSPFTIFYNPRACPSEFVIPLAKYRKAVFGTQLSAGMRFGMMFETEESGKRRYMGIVVGVSDLDPLRWPGSKWRNVQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLASGLKRPLQSGFLENEWGNLIRRPFIRVPENGTLELPNSISNLYSEYMMKMAYKPELINNNVAFLSAMQQESAATRDPLEMKTTLAPESHKHLASSGSMQPKNVNSQSVPDQSNVLNMHSMSKSDHQPAKLHPLAKNDNNLSSGTVIDTPKLESEVLTDNMFDLPSINGSSNIEKMAENPVISQNLASPMTFLNQNQNTLLCQSNPWPMQPQIESSTSHHQLVDVSQSDPGFVSGMFPQLDIDELMMYSSCQPLSDLQEHTALQTQAMNSPLPPMSQEIWDHYVKNFKFSFPTDQLTSMYQPGMYGLNGISSSNNMKDLSAESNNQSEICVNVDVSNSVSTTTMVDPSTASTILDEFCTLKDKDFQNQPDCMVGNLSSSQDVQSQITTASLAESHAFNSGGTSSSHVDFDESSFLQKNSWEQIVPPMRTYTKVQKAGSVGRSIDVTTFKNYEELISAIECMFGLYGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKQMSEEGMKLLNSGALQGING 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0546 928 CDD B3_DNA 152 253 IPR003340 GO:0003677
Lal8g0546 928 Gene3D - 151 254 IPR015300 -
Lal8g0546 928 SUPERFAMILY CAD & PB1 domains 823 901 - -
Lal8g0546 928 ProSiteProfiles PB1 domain profile. 822 906 IPR000270 GO:0005515
Lal8g0546 928 SUPERFAMILY DNA-binding pseudobarrel domain 141 282 IPR015300 -
Lal8g0546 928 MobiDBLite consensus disorder prediction 483 518 - -
Lal8g0546 928 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Lal8g0546 928 MobiDBLite consensus disorder prediction 481 537 - -
Lal8g0546 928 Gene3D - 819 911 - -
Lal8g0546 928 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 926 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal8g0546 928 Gene3D - 317 389 - -
Lal8g0546 928 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Lal8g0546 928 Pfam AUX/IAA family 821 909 IPR033389 -
Lal8g0546 928 PANTHER AUXIN RESPONSE FACTOR 5 34 926 - -
Lal8g0546 928 SMART B3_2 153 255 IPR003340 GO:0003677
Lal8g0546 928 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0546 Lal-Chr8 3766609 3772505 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal8g0546 AUX_IAA 3.8e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0546 8 3766609 3772505 Lal8g0546 8 3766609 3772505 ECH