Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0489 ATGTTTGCCAATAACTTATCTCCTTCCTCACTTCCCACTTCTGATCCTTCTTTCGCATGTGCTGAGAATGCCAATTCCATCAATAAAAGGAAGAGAAGACCAGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCACTATCACCAAAGACCTTATTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAGAACCTTCAGATGCATAGAAGGAGGCACAAGGTGCCATGGAAGTTATTGAAGAGGGAAACACCAGTGGTGAAGAAGAAAGTGTTTGTGTGTCCTGAACCTACTTGCTTGCACCATGATCCATGTCATGCACTTGGAGATCTTGTTGGCATAAAGAAACATTTCAGAAGGAAACATAGTAATCATAAGCAATGGGTTTGTGAGAGATGCTCTAAAGGTTATGCAGTGCAGTCTGATTATAAAGCTCATCTCAAAACTTGTGGCACTAGAGGCCACTCTTGTGATTGTGGACGTGTTTTCTCAAGGGTGGAAAGCTTTATCGAGCACCAAGATGCTTGTAACATGGGAAAGCTAAGGACAGAACCTCATCATCATCAACAACTGCAACAACAACAACAACAACCACCGCCACCTGCATGTTTGTCTAGAACAACTTCAAGCCCATCAAGTGAAACAAATTTCAGCACATGTCCTAATTGGCCACAAGGACTAGTAGTAATTCCAAGATCAATAAAAGAATCCACACTCTTCAATATGAACCATCCTACTTCCACTATTGCCGCTACTGCTGAAGGCTCAATATCCATGAAAAACAATAAACTCCACCCCAATTTGGACCTTCAACTCTCCACAAACACCAAAACATCAAACACTTACACCATTGATGTAGTAGCTGCATCCTTGTCACCAAATAAGAGAGAGGATCATCATCATTATCAAAAACATTCCACACAGTTGCAGCTATCAATTGGATCATCAGATAACAATGAGAAAAATGGTCAATCGAATAGGAATAACAGCAACTCATCACCCAAAGAGAGCAGCAGCACTTGTAATGAGAAACAAGGCATGGATTTGTTGAGGGTAGCCATGGCAGAGAAAGTGTATGCCGAGGAAGCAAGGAAGCAAGCAAAGAAGCAGATAGAACTTGCAGAACAAGAGTTAACAAATGCTAAGAGGATTAGACAACAAGCACGAGTGGAACTTGACAAAGCATATGCTTTGAAAGAGGATGCAATGAAGCATATAAACTCCACCATGCTTCAAATCACTTGCCATGCTTGCAAGCAAAAGTTTCAAGCACGAAACACAACAAGTACCACACTTGATCATGAGACTAATAACTCTTTGGTGTTAAGCTACATGTCTTCTGCTATAACAGTAGAAGGTGGCGAAGTAGAAAACAACAATGGGAAATATCACCATGGGAAATCAAACAACTAA 1434 0.4142 MFANNLSPSSLPTSDPSFACAENANSINKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGKLRTEPHHHQQLQQQQQQPPPPACLSRTTSSPSSETNFSTCPNWPQGLVVIPRSIKESTLFNMNHPTSTIAATAEGSISMKNNKLHPNLDLQLSTNTKTSNTYTIDVVAASLSPNKREDHHHYQKHSTQLQLSIGSSDNNEKNGQSNRNNSNSSPKESSSTCNEKQGMDLLRVAMAEKVYAEEARKQAKKQIELAEQELTNAKRIRQQARVELDKAYALKEDAMKHINSTMLQITCHACKQKFQARNTTSTTLDHETNNSLVLSYMSSAITVEGGEVENNNGKYHHGKSNN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0489 477 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 459 - -
Lal8g0489 477 MobiDBLite consensus disorder prediction 190 226 - -
Lal8g0489 477 SMART c2h2final6 58 80 IPR013087 -
Lal8g0489 477 SMART c2h2final6 135 162 IPR013087 -
Lal8g0489 477 SMART c2h2final6 99 129 IPR013087 -
Lal8g0489 477 Coils Coil 364 398 - -
Lal8g0489 477 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lal8g0489 477 PANTHER OS03G0310200 PROTEIN 1 459 IPR039288 GO:0009630
Lal8g0489 477 MobiDBLite consensus disorder prediction 1 45 - -
Lal8g0489 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lal8g0489 477 MobiDBLite consensus disorder prediction 1 24 - -
Lal8g0489 477 MobiDBLite consensus disorder prediction 195 226 - -
Lal8g0489 477 MobiDBLite consensus disorder prediction 301 350 - -
Lal8g0489 477 Pfam Zinc-finger of C2H2 type 58 76 - -
Lal8g0489 477 MobiDBLite consensus disorder prediction 313 350 - -
Lal8g0489 477 Gene3D Classic Zinc Finger 46 131 - -
Lal8g0489 477 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0489 Lal-Chr8 3319854 3323164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0489 26 465 C2H2 Transcription Factor Family AT2G01940 53.626 1.89e-142 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g0489 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0489 8 3319854 3323164 Lal25g0493 25 3460300 3463898 LSH
Lal16g0919 16 6080436 6083912 Lal8g0489 8 3319854 3323164 PCT
Lal15g0902 15 6826515 6830260 Lal8g0489 8 3319854 3323164 PCT
Lal8g0489 8 3319854 3323164 Lal16g0919 16 6080436 6083912 PCT
Lal8g0489 8 3319854 3323164 Lal15g0902 15 6826515 6830260 PCT