Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0487 ATGGAAGGAGGAACATTATCACTATATAGAGAGTGCTTGAGGAACCATGCAGCCAACCTTGGAAGCTATGCCACCGACGGCTGTGGTGAGTTCACCCTCGACGACATGTCACTTGGTGGCAGCGGCAGCCTCCGATGCGCCGCTTGTGGATGCCACCGCAGCTTCCACCGCAAAGTGATCATGGACCATTGTGAAGGGAAGGTGGTGGCCAATGTGGAAAGAGAGAGGAAAGGGTCAGGGAAAAAGAGGTTCAGAACAAAGTTCACAAATGAACAGAAGGAGAACATGTTAGGTTTTGCTGAGAAAATTGGGTGGAAGTTACAAAGGAAAGAGCTTGATGATGAGATTGATAGGTTTTGCAAAAGTGTTGGGGTTTGTAGGCAAGTTTTCAAGGTTTGGATGCATAACCACAAGCACACTTCATCTTCTTTTTCTGCATTTATTGCCAATGTTTCCTCTCTCACTCAGTAA 471 0.4671 MEGGTLSLYRECLRNHAANLGSYATDGCGEFTLDDMSLGGSGSLRCAACGCHRSFHRKVIMDHCEGKVVANVERERKGSGKKRFRTKFTNEQKENMLGFAEKIGWKLQRKELDDEIDRFCKSVGVCRQVFKVWMHNHKHTSSSFSAFIANVSSLTQ 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0487 156 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 147 - -
Lal8g0487 156 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 59 IPR006456 -
Lal8g0487 156 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 6 147 - -
Lal8g0487 156 SUPERFAMILY Homeodomain-like 76 140 IPR009057 -
Lal8g0487 156 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 9 58 IPR006456 -
Lal8g0487 156 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 81 138 IPR006455 -
Lal8g0487 156 Gene3D - 68 144 - -
Lal8g0487 156 Pfam ZF-HD protein dimerisation region 8 59 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0487 Lal-Chr8 3306824 3307294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0487 3 140 ZF-HD Transcription Factor Family AT5G65410 40.984 2.86e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal8g0487 ZF-HD_dimer 1.3e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0920 16 6096800 6097369 Lal8g0487 8 3306824 3307294 PCT
Lal23g0713 23 9770205 9770756 Lal8g0487 8 3306824 3307294 PCT
Lal8g0487 8 3306824 3307294 Lal16g0920 16 6096800 6097369 PCT
Lal8g0487 8 3306824 3307294 Lal23g0713 23 9770205 9770756 PCT