Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0479 ATGAATTCTAATTCAGATTGGATGTGTCACAGATATTACTATAAAAGAGAAAAAGAAGAGATGGAACAATATTCATCAAAATCAGAAACACCAAAATCTCTAATGGAGAACCTTCTTGGTCTTCTAAGGGTTCGTGTCAAACGAGGTGTCAACCTTGCTGTTCGTGATGTCCGTAGTAGCGATCCTTATGTTGTTCTTAAGATGGGCAAACAGAAACTTAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACATTACCTTCTCTGTTTTAGATCCGAATCTTCCAATTATATTGATTGTGTATGACCATGACACTTTTAGCAAAGACGACAAAATGGGAGATGCAGAATTCGAAATCTCACCATTTATAGAAGCTTTAAGAACGAACCTAACTGGCCTCCCAAGTGGAACTGTAATATCAAGAATACAACCAAGCAAGGAAAATTGTTTGGCAGATGAAAGCTGCATCACTTACACCAGTGGTAAGGTCATCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTAGAAATTCAATTGCATTGGATTGATCTTCCTGGTTGTAAGGGTTTGTGA 600 0.3767 MNSNSDWMCHRYYYKREKEEMEQYSSKSETPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVLKMGKQKLKTRVIKKDVNPEWNEDITFSVLDPNLPIILIVYDHDTFSKDDKMGDAEFEISPFIEALRTNLTGLPSGTVISRIQPSKENCLADESCITYTSGKVIQDMILRLQNVECGEVEIQLHWIDLPGCKGL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0479 199 Gene3D C2 domain 35 195 IPR035892 -
Lal8g0479 199 SMART C2_3c 41 136 IPR000008 -
Lal8g0479 199 Pfam C2 domain 40 126 IPR000008 -
Lal8g0479 199 ProSiteProfiles C2 domain profile. 26 137 IPR000008 -
Lal8g0479 199 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 30 198 IPR044562 -
Lal8g0479 199 CDD C2_ArfGAP 39 182 - -
Lal8g0479 199 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 125 IPR035892 -
Lal8g0479 199 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 30 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0479 Lal-Chr8 3237048 3239338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0479 72 199 C2H2 Transcription Factor Family AT1G70790 58.462 1.29e-51 161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1052 6 7623241 7627156 Lal8g0479 8 3237048 3239338 ECH
Lal22g0933 22 7410663 7413422 Lal8g0479 8 3237048 3239338 ECH
Lal15g0740 15 5204040 5205674 Lal8g0479 8 3237048 3239338 ECH
Lal8g0479 8 3237048 3239338 Lal8g0479 8 3237048 3239338 ECH