Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0432 ATGGCTGAATTCACTGAAGATTTTCAAAGCTTCATTGATCCAAACATGGAACTCATAAATCAATTCATAGGGATGAATCCACATGCCCTAGACAATTCACATGTGAACATGCAGAACTTGATGATGCCTTTCTCTAGTGACAGCTTTTTTGGATCACAAGAACATGAATTTCAAGGAAACTTTGAAGGAAATTTGCATGATCTTGTTAACAATGCACTTCAAGTTTCCCTTCCAAATTTTCCAGCAGAAAATGAAATCCATGAAGTTAAAAAGAGGAAAATAATGGATACTCATACTACTCCTGATACCACTTCAGAAAATTCAACCCCTGCAGCTTCTGAGAGTGGAGGAAAGATACGAAATAATTTTGAAGGAGTTAAGAGAGCAAAAAACTATCCAACAGAAGAGGAAAAACTAAAGGAAGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTATAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGACAAATTAAGATGCTTACAGAACATTGTCCCAGGGTGTTACAAGACCATGAGCATGTCAGTGATGTTGGATGAAATTATCAACTATGTCCAGTCTTTGCAGAATCAAGTTGAGTTCCTTTCTTTGAAGCTTACTGCAGCAAGTACCTTTCATGGCTTCAGTTCAGAGACAGATACTTTAGAAACAATGCAGAGAGCAAAAGCATCTGAGGCAAAAGAGTTAGGCAATTATGAGAGAGAAGGATATGGAAGAGTCACTTGCTTCCAACCAACATGGCCCATTTGA 789 0.384 MAEFTEDFQSFIDPNMELINQFIGMNPHALDNSHVNMQNLMMPFSSDSFFGSQEHEFQGNFEGNLHDLVNNALQVSLPNFPAENEIHEVKKRKIMDTHTTPDTTSENSTPAASESGGKIRNNFEGVKRAKNYPTEEEKLKEVVHVRARRGQATDSHSIAERVRRGKINDKLRCLQNIVPGCYKTMSMSVMLDEIINYVQSLQNQVEFLSLKLTAASTFHGFSSETDTLETMQRAKASEAKELGNYEREGYGRVTCFQPTWPI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0432 262 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Lal8g0432 262 SMART finulus 157 207 IPR011598 GO:0046983
Lal8g0432 262 Coils Coil 228 248 - -
Lal8g0432 262 PANTHER TRANSCRIPTION FACTOR BEE 1 2 261 - -
Lal8g0432 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 215 IPR036638 GO:0046983
Lal8g0432 262 Gene3D - 148 217 IPR036638 GO:0046983
Lal8g0432 262 MobiDBLite consensus disorder prediction 100 116 - -
Lal8g0432 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Lal8g0432 262 MobiDBLite consensus disorder prediction 96 119 - -
Lal8g0432 262 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 261 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0432 Lal-Chr8 2908368 2910411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0432 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 49.612 8.01e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0432 HLH 2.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1644 6 19205330 19207783 Lal8g0432 8 2908368 2910411 ECH
Lal6g0677 6 4446989 4448438 Lal8g0432 8 2908368 2910411 ECH
Lal18g1019 18 13195530 13197763 Lal8g0432 8 2908368 2910411 ECH
Lal8g0432 8 2908368 2910411 Lal8g0432 8 2908368 2910411 ECH