Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0057 ATGGACCCTTTTCTTCCTCACCCTCTCTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCACCACCACCAACTACTTAGACCCTGTCTTTTCTGGACTCACCTTCCAAACCCTACTCTCCCTCAACCCTTCTCTCTTCTCCTCCTCCCTCTCCGATCACCACCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCACCACCACCCTCCAACTTGTTCCGTCCTCACATGAGAAGCAACCTTGCAAGACAGAGAAGGCAGAAGCTGAGTGAGAAGACACGCTGCTTGCAGAAACTCATGCCTTGGGACACTAAAATGGACCAAGCTACTCTTCTTCAACATGCTTACAAATATGTCAAGTTCTTACAGGCTCAACTCACTCTCCTTCAATCTATGCCTTCTTCTTCTACTACTACTACTACTACTACTACTTCATTTGTTGGTAGTGACTTGGAGAGGCTGAATAGGAACCAGCTTCTGCAGGTTGTGGTGAACTCACCAGTTGCACAAACCATGCTTTGTTCTCAAGGCTTTTGTGTTTTCTCAATGGAACATTTGTTTTTCCTCACTAAGGATATTTCTTTTACACCACTACTACATCATCATCCCACCAACAACCCTACCTAG 633 0.4629 MDPFLPHPLFFSSSSSSSSSSSSTTTNYLDPVFSGLTFQTLLSLNPSLFSSSLSDHHPPPPPPPPPPPPPPSNLFRPHMRSNLARQRRQKLSEKTRCLQKLMPWDTKMDQATLLQHAYKYVKFLQAQLTLLQSMPSSSTTTTTTTTSFVGSDLERLNRNQLLQVVVNSPVAQTMLCSQGFCVFSMEHLFFLTKDISFTPLLHHHPTNNPT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0057 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Lal8g0057 210 SUPERFAMILY Formin homology 2 domain (FH2 domain) 60 69 - -
Lal8g0057 210 Pfam Helix-loop-helix DNA-binding domain 84 125 IPR011598 GO:0046983
Lal8g0057 210 MobiDBLite consensus disorder prediction 9 26 - -
Lal8g0057 210 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 193 IPR045843 GO:0003700|GO:0006355
Lal8g0057 210 MobiDBLite consensus disorder prediction 49 74 - -
Lal8g0057 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 134 IPR036638 GO:0046983
Lal8g0057 210 MobiDBLite consensus disorder prediction 55 74 - -
Lal8g0057 210 MobiDBLite consensus disorder prediction 1 26 - -
Lal8g0057 210 CDD bHLH_AtbHLH_like 78 132 IPR045239 -
Lal8g0057 210 Gene3D - 78 144 IPR036638 GO:0046983
Lal8g0057 210 PANTHER TRANSCRIPTION FACTOR BHLH117 13 193 - -
Lal8g0057 210 SMART finulus 81 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0057 Lal-Chr8 450572 451204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0057 87 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.794 6.06e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0057 HLH 0.00026 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0057 - - lang:109357899 221.476