Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1342 ATGGGAAGAGGAAGAGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACTTTTGCCAAGAGAAGAAATGGGTTACTCAAGAAGGCTTATGAGCTCTCAATCCTCTGTGATGCTGAGGTTGCACTCATCATCTTCTCCAACCGTGGCAAGCTCTACGAGTTCAGCAGCACCTCCTGCATGATGAAAACACTGGATAAGTACCAGAAATACAGTTACAGTGCATTGGAGAATAGTCCATCAATCACTGACACTCAGACCAAATATCAGGAATATGTGAGACTGAAAGCAAAGGTAGAAGAGCTCCAACGCTCACAAAGAAACCTACTTGGCGAAGATCTTGCCCAAATGAACACAACTCAGCTGGAGCAGCTTGAGAATCAACTGGAGGCAGCACTGAGAAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGATGATCTTTACAACCGGGAAACAGTGCTTGTTGAAACTAATAATGCGTTAAGGAGCAAGTTGGAAGAAACTAATAACTCACAAGTTCCTGCGCCATTATCATTATTGGAAGCAAGAGGGCCTAACATCCATTATACCCGCTTTCCTCCTCATTCAGAAGGCTTTTTCCACCCTTTAGGAGTTAACCCCAACTTGCAAATTGGATACAGCCAGACAGGTACTGATGATGACGTAAATGTTGGTGCTTCATCCTTAAATATGCATGGATTCGTCTCTGGGTGGATGCTTTAA 741 0.4318 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFSSTSCMMKTLDKYQKYSYSALENSPSITDTQTKYQEYVRLKAKVEELQRSQRNLLGEDLAQMNTTQLEQLENQLEAALRNIRSTKTQFMLDQLDDLYNRETVLVETNNALRSKLEETNNSQVPAPLSLLEARGPNIHYTRFPPHSEGFFHPLGVNPNLQIGYSQTGTDDDVNVGASSLNMHGFVSGWML 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1342 246 Coils Coil 117 144 - -
Lal7g1342 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Lal7g1342 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal7g1342 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal7g1342 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal7g1342 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal7g1342 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal7g1342 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal7g1342 246 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Lal7g1342 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal7g1342 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal7g1342 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 233 - -
Lal7g1342 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal7g1342 246 Coils Coil 94 114 - -
Lal7g1342 246 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lal7g1342 246 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1342 Lal-Chr7 18619335 18624471 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1342 1 246 MADS-box Gene Family AT5G15800 52.672 6.95e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal7g1342 K-box 4.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1586 6 18365659 18371655 Lal7g1342 7 18619335 18624471 ECH
Lal7g1342 7 18619335 18624471 Lal7g1342 7 18619335 18624471 ECH
Lal14g1878 14 18242293 18252373 Lal7g1342 7 18619335 18624471 LSH