Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1335 ATGCAAGAAACACATTCCATGGGTGGAGGAGACAGGAGGCTCAGACCCCACCACCACCACCACCACCAGGCCTTGAACTGCCCTCGCTGCGACTCTCTCAACACCAAGTTCTGTTACTATAACAACTACAACCTCTCTCAGCCACGTCACTTCTGCAAAAACTGCCGTCGTTACTGGACCAAAGGCGGCGTCCTCCGCAACATCCCCATCGGCGGTGGTTGCCGCAAATCCAAACGCTCCAATAACCACCACCACAACAACAACTCTTCTGAAACCGAAACTACTGCGCCACCGGAACATAACTCGAATTCTCATTCCAGTAGTGAAAGTTCCAGCCCCACCGCCACCACTGAAGCGGTTTCAGCACCAAACACTTTCAACTCTGATTCCAACAATAAAAATGAATCAAAGTTGTTGACCCCTTCCTCAAACCCTACTTTGGAGACAGGTGCAGTCGAACTACAACAAGGAACAGGGGATTCTACTATTTTCTCTGATATTGGAAGCAGCTTCACATGCTTGATCACTTCCAACAACGACATGTTGCAGTTTGGATTCGATTCTACAACTATCCCAGATGCGTCGTCGTTTCAATGGCAGCACCAAAAGGGGTTCACAATGAACATGACTCTCACCAGTGATGACGTGGAATTGAAGTTTCCGGATAATCTTAACGGTTGTGATGCTTCGTTGCTTGATCACGGTACTGTACCCGTCGATTTGCCAGGGCTTCAAAACAAAACCGGGCACGAAGGATTTGGATCGTTGGATTTGCATGATGATGGAGATCAAGGTTTGTTTGATCTTTCTAACACCGTTGATCAGACTTACTGGACTCCTCATACTACTCACTGGTCTGATCACGACAATTCTACTCTCTTCCATCTTCCCTGA 894 0.4776 MQETHSMGGGDRRLRPHHHHHHQALNCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNIPIGGGCRKSKRSNNHHHNNNSSETETTAPPEHNSNSHSSSESSSPTATTEAVSAPNTFNSDSNNKNESKLLTPSSNPTLETGAVELQQGTGDSTIFSDIGSSFTCLITSNNDMLQFGFDSTTIPDASSFQWQHQKGFTMNMTLTSDDVELKFPDNLNGCDASLLDHGTVPVDLPGLQNKTGHEGFGSLDLHDDGDQGLFDLSNTVDQTYWTPHTTHWSDHDNSTLFHLP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1335 297 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Lal7g1335 297 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Lal7g1335 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 279 IPR045174 GO:0003700|GO:0006355
Lal7g1335 297 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Lal7g1335 297 MobiDBLite consensus disorder prediction 69 147 - -
Lal7g1335 297 PANTHER DOF ZINC FINGER PROTEIN 4 9 279 - -
Lal7g1335 297 MobiDBLite consensus disorder prediction 87 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1335 Lal-Chr7 18571094 18571987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1335 11 297 C2C2-Dof Transcription Factor Family AT5G60850 36.093 7.90e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal7g1335 zf-Dof 5.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1335 - - gmx:778097 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1335 7 18571094 18571987 Lal7g1335 7 18571094 18571987 ECH
Lal14g1877 14 18240598 18241494 Lal7g1335 7 18571094 18571987 LSH
Lal7g1335 7 18571094 18571987 Lal19g1434 19 17002931 17003827 LSH