Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1644 ATGCCTGCAATGGTTTCTTCTCTTTCTCAAGTTATGGGAAATACCAATCAAAACCCACATGTGACACAAACAATCACTTTTCCTGTTTCAGCTTCTATGGTCAACCAAGATTTTCCTCACCCATACCCATCTCAACCTCTTCTACATCAAGATATGACAAAGAAACCACCACACTATAGAGGAGTAAGACAAAGACCATGGGGAAAATGGGCAGCAGAAATTCGTGACCCTAAAAAAGCAGCTAGAGTATGGCTTGGAACATTTGAAACAGCAGAAGATGCAGCCATTGCATATGACAAAGCTGCACTCAAATTCAAAGGAACAAAAGCTAAGCTTAATTTCCCTCATATTCTTCAAGGAAACCCTAATATTTTACCCTTTCATGCACCTTCTACTACCACCACCACCACTACTACTACTACTACTATTCCTATTGAACAAACAACTCCATCATTTAATGTTTATCCTAACACATCATTGTCCACACATGATTATGTTGATCATCAAGTTTTTCCAAATCTGTTTCAATATGCACAGATTCTTTCTAGTAATGATGCTGAATTGTCTTATTACACCAACCATCTTTTCAACCAACAACAACAATCTTTCATCAATTCACAATTTTCTAATACCACTTTGTCTTCATCCTCATCTTCTTTATCATCCTTCTATAATCAGCAGCAACAACAACAACATGATGATGATGATGAAGAAGAAAGACATCATCACCCAGGGCAGTAG 741 0.3752 MPAMVSSLSQVMGNTNQNPHVTQTITFPVSASMVNQDFPHPYPSQPLLHQDMTKKPPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDKAALKFKGTKAKLNFPHILQGNPNILPFHAPSTTTTTTTTTTTIPIEQTTPSFNVYPNTSLSTHDYVDHQVFPNLFQYAQILSSNDAELSYYTNHLFNQQQQSFINSQFSNTTLSSSSSSLSSFYNQQQQQQHDDDDEEERHHHPGQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1644 246 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Lal6g1644 246 MobiDBLite consensus disorder prediction 215 246 - -
Lal6g1644 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 45 235 - -
Lal6g1644 246 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Lal6g1644 246 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lal6g1644 246 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lal6g1644 246 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Lal6g1644 246 MobiDBLite consensus disorder prediction 230 246 - -
Lal6g1644 246 MobiDBLite consensus disorder prediction 215 229 - -
Lal6g1644 246 Gene3D AP2/ERF domain 58 117 IPR036955 GO:0003700|GO:0006355
Lal6g1644 246 PANTHER DNA-BINDING DOMAIN 45 235 IPR044808 GO:0003700|GO:0009873
Lal6g1644 246 CDD AP2 57 116 IPR001471 GO:0003700|GO:0006355
Lal6g1644 246 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1644 Lal-Chr6 19205330 19207783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1644 4 196 AP2-EREBP Transcription Factor Family AT5G13330 46.231 6.16e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal6g1644 AP2 2.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1644 6 19205330 19207783 Lal16g1011 16 6723723 6725452 ECH
Lal6g1644 6 19205330 19207783 Lal8g0432 8 2908368 2910411 ECH
Lal6g1644 6 19205330 19207783 Lal10g0976 10 17037992 17039843 ECH
Lal6g1644 6 19205330 19207783 Lal6g1644 6 19205330 19207783 ECH
Lal6g1644 6 19205330 19207783 Lal19g0997 19 13842021 13843395 ECH
Lal6g1644 6 19205330 19207783 Lal4g0680 4 5321613 5323687 ECH
Lal6g1644 6 19205330 19207783 Lal21g0694 21 5496544 5497748 ECH
Lal6g1644 6 19205330 19207783 Lal12g1301 12 15962022 15964578 ECH
Lal6g0677 6 4446989 4448438 Lal6g1644 6 19205330 19207783 ECH
Lal18g1019 18 13195530 13197763 Lal6g1644 6 19205330 19207783 ECH