LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g1636	ATGGATTCAACTTCTCTTTCTCCAAATGTTTCATTAGAAATTCCTTTGACTCCACCACCATCTTCTGAGCCTAATGAAACCTCTGATTCTTCTTCTCCACCTCCTTCAAATTCTCAGGATGTGCCTGCAGCACCTCCTCCATCCCCTCCCCTTTCTCCTCCTCCACCATCAACTACGCCGCCGCCGACCATTTCACCTCCTCCTCCACAACCTGTTTCTCCACCACCAGCTGTAGCAGCAGCATCACCCCCACCACAAGCAGCTACCATTGCCCCTCCTCCAGCTCAGAATTTGTCCCCACCTCCACCAGTGGTAGTTGCTGCTCCTCCTCCTAAAGCTCAGAATTTGTCCCCTCCTCCACCATTGGTAGCTTCTGCACCTCCTCCTCAACCCTCAAATCCACCTCCTCCTCAACCAATTTCACCCTCACCTCCTCCTCCTCCTCCTCCTGCCAATGTGGCAAGTCCACCAACCACCCATTCTCCTCCTCCCCCTCATGGAAAGCCGCCGAAAGCTACCCCTTCGCCTCCTTCGCGTGCAACCCCTCCATCTGTTTCTCAATCCCCTCCTTCCCCTGGTGCTCCTCCTCCATCCACATTGCCATCGACAACCCCTCCTTCGGTTGCACCACCTCCAGCTTCTTTGCCCGGTCCTGCGCCTAATAAGACAGTGGCCGGGGGTCCAACTGTAGCTCTACCCTCTATTCCAACTGAGAAACCCACTGCTAAACCAACTAATGGGAATGGCATTGACGTTGTATCCACACCTTCGAATTCGGGAGGGATGAATACCGGAGGCAATGTGGCTGTTGGTGTTCTAGTTGGGTTTTTTGTCCTAAGCCTTATTGTTATGGCTGTATGGTTTGTAAAGAGAAAGAAGAGGAAGGGAACAGGATCGAAAAACGGCTTTCCTATTGATTCTCCATTAACATCTTCTCACAATTCAGGTACCTTATTCTTGAGGCCACAGTCTTCGGCTAACTTTGCAGTTACTACCTCTAGTAGTGATTTTGTGTATACACAGCCAGAGTTCAGTGGAGTAAGTAGTTCAAGGTCATCATTCACATATGAAGAACTTAGTGAAGCTACGAATGGGTTTTCGGCACAAAATATGTTGGGAGAAGGTGGATTTGGTTGTGTGTATAAAGGTTTGCTCATAGATGGAAGAGAAGTGGCTGTGAAACAACTCAAAATTGGTGGCGGGCAAGGAGAACGGGAATTCCAAGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGCCACCTAGTTTCCTTGGTGGGTTACTGTATATCCGATCATCAAAGGTTGCTTGTCTACGATTTTCTTCCCAATGATACTCTTCATTTCCATCTTCATGGTAAAAACAGACCTGTTCTGGATTGGCCTACCAGAGTCAAGATTGCTGCTGGTGCCGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGACATTAAGTCATCAAACATCCTTCTTGATCAAAATTTTGAAGCTCAAGTTTCAGACTTTGGGCTAGCAAAATTGGCTTTAGATACAAATACACATGTATCCACACGTGTAATGGGAACCTTTGGGTATGTTACGCGTAGGTACATGGCACCAGAGTACGCAACGACAGGGAAATTGACTGAAAAATCTGATGTATATTCCTTTGGGGTTGTGCTTTTGGAGCTAATTGTCGGTCGGAAGCCTGTAGATACTTCTCAGCCAATGGGTGATGAAAGCTTGGTTGAATGGGCTCGGCCTCTGTTGAGCGAAGCACTCGAATCTGAGGACTTCGAGAATTTGGTAGATCCAAGACTGGAAAAGAACTACAATAGAGATGAAATGTTTCAGATGATCGAGGCTGCTGCAGCCTGCGTGCGTCACTCTGCCGTAAAGAGGCCAAAGATGAGCAAGGTAGTGAGAGCTTTAGATTCCTTAGATGAATTTCCGGATCTCAATAATGGAGTGAAACCCGGGCAGAGTTCGGTCTTCAATCCAGCGCAGCAATCCGCACAAATGAGAATGTTTAGGAGGATGGCTTTCGGTAGCCATGATAGTTCGACATTATTTAATGAGACTCAGAGCAGCTGGAGGAGTGGAGAACAAGAGGACTCAACAATTATGTACTCTCAAAACAGATCTAGGCCTTGGAACCTTTGA	2163	0.4748	MDSTSLSPNVSLEIPLTPPPSSEPNETSDSSSPPPSNSQDVPAAPPPSPPLSPPPPSTTPPPTISPPPPQPVSPPPAVAAASPPPQAATIAPPPAQNLSPPPPVVVAAPPPKAQNLSPPPPLVASAPPPQPSNPPPPQPISPSPPPPPPPANVASPPTTHSPPPPHGKPPKATPSPPSRATPPSVSQSPPSPGAPPPSTLPSTTPPSVAPPPASLPGPAPNKTVAGGPTVALPSIPTEKPTAKPTNGNGIDVVSTPSNSGGMNTGGNVAVGVLVGFFVLSLIVMAVWFVKRKKRKGTGSKNGFPIDSPLTSSHNSGTLFLRPQSSANFAVTTSSSDFVYTQPEFSGVSSSRSSFTYEELSEATNGFSAQNMLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISDHQRLLVYDFLPNDTLHFHLHGKNRPVLDWPTRVKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDQNFEAQVSDFGLAKLALDTNTHVSTRVMGTFGYVTRRYMAPEYATTGKLTEKSDVYSFGVVLLELIVGRKPVDTSQPMGDESLVEWARPLLSEALESEDFENLVDPRLEKNYNRDEMFQMIEAAAACVRHSAVKRPKMSKVVRALDSLDEFPDLNNGVKPGQSSVFNPAQQSAQMRMFRRMAFGSHDSSTLFNETQSSWRSGEQEDSTIMYSQNRSRPWNL	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g1636	720	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	486	498	IPR008271	GO:0004672\|GO:0006468
	Lal6g1636	720	MobiDBLite	consensus disorder prediction	38	218	-	-
	Lal6g1636	720	Gene3D	Phosphorylase Kinase; domain 1	329	441	-	-
	Lal6g1636	720	MobiDBLite	consensus disorder prediction	23	37	-	-
	Lal6g1636	720	PRINTS	Proline rich extensin signature	15	36	-	-
	Lal6g1636	720	PRINTS	Proline rich extensin signature	40	56	-	-
	Lal6g1636	720	PRINTS	Proline rich extensin signature	58	75	-	-
	Lal6g1636	720	PRINTS	Proline rich extensin signature	76	101	-	-
	Lal6g1636	720	SMART	serkin_6	366	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal6g1636	720	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8	90	693	-	-
	Lal6g1636	720	ProSiteProfiles	Protein kinase domain profile.	366	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal6g1636	720	MobiDBLite	consensus disorder prediction	1	249	-	-
	Lal6g1636	720	SUPERFAMILY	Protein kinase-like (PK-like)	345	644	IPR011009	-
	Lal6g1636	720	Gene3D	Transferase(Phosphotransferase) domain 1	442	656	-	-
	Lal6g1636	720	MobiDBLite	consensus disorder prediction	691	720	-	-
	Lal6g1636	720	Pfam	Protein tyrosine and serine/threonine kinase	368	644	IPR001245	GO:0004672\|GO:0006468
	Lal6g1636	720	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	90	693	-	-
	Lal6g1636	720	ProSitePatterns	Protein kinases ATP-binding region signature.	372	394	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g1636	Lal-Chr6	19045654	19052070	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal6g1636	257	640	Trihelix Transcription Factor Family	AT1G68690	62.760	2.37e-178	523

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lal6g1636		PK_Tyr_Ser-Thr	1.7e-45	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g1636	6	19045654	19052070	Lal6g1636	6	19045654	19052070	ECH
	Lal18g0568	18	4760367	4772597	Lal6g1636	6	19045654	19052070	LSH
	Lal22g1315	22	15977254	15982943	Lal6g1636	6	19045654	19052070	LSH