Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1586 ATGGGAAGAGGAAGAGTAGAGTTAAAGAGAATAGAGAACAAGATAAATAGACAAGTAACATTTGCAAAGAGAAGAAATGGACTTCTCAAGAAAGCATATGAATTATCAGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGCTTTATGAGTTCTGTAGCACCTCTAGTAGCATGCTCAAGACACTTGATAGGTACCAAAACTGCACTTATGGTGCAGTGGAAGTTAACAAGCCTGCTAAAGAACTTGAGCAGAGTAGCTACCGTGAGTACCTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACACAGAGAAACCTTCTAGGTGAAGACTTGGGGCCACTCAATACCAAAGAACTTGAGCAGATTGAACAGCAATTGGATTCCTCTCTCAATCTAGTGAGGTCCACAAAGACACAATTCATGTTGGACCAGTTATCTGATCTTCAAAATAAGGAGCATATGTTGGTGGAAGCAAATAGAACTTTGACAATGAAGCTAGAAGAAATAAATTCAAGAAATCACTATAGACAATCATGGGAAGGTAGTGATCCACATAATGGTCATTCTCAAGGGTTCTTCCAACCTTTGGAATGCAATCCAACATTGCAAATTGGGTACAATAATATAGCTTCAGATCAAATAAATTTCACAACTCAAGCTCAACATGTGAATGGTTTTGTTCATGGGTGGATGCTTTGA 720 0.3889 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSSMLKTLDRYQNCTYGAVEVNKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQIEQQLDSSLNLVRSTKTQFMLDQLSDLQNKEHMLVEANRTLTMKLEEINSRNHYRQSWEGSDPHNGHSQGFFQPLECNPTLQIGYNNIASDQINFTTQAQHVNGFVHGWML 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1586 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal6g1586 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal6g1586 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal6g1586 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal6g1586 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal6g1586 239 Coils Coil 126 146 - -
Lal6g1586 239 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal6g1586 239 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
Lal6g1586 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Lal6g1586 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal6g1586 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal6g1586 239 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lal6g1586 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lal6g1586 239 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal6g1586 239 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1586 Lal-Chr6 18365659 18371655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1586 1 239 MADS-box Gene Family AT5G15800 69.318 1.41e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal6g1586 K-box 6.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1586 6 18365659 18371655 Lal7g1342 7 18619335 18624471 ECH
Lal6g1586 6 18365659 18371655 Lal6g1586 6 18365659 18371655 ECH
Lal22g0680 22 4814002 4826086 Lal6g1586 6 18365659 18371655 ECH