Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1038 ATGGAGGGTCTTCCCCAAGGTTACCGTCCTAACGTAGGTGTCTGTCTCATCAATTCTGAAGATCAGATTTTTGTGGCTTCTAGGTTGAATGTTCCAGGAGCATGGCAAATGCCTCAGGGGGGAATTGAAGATGGTGAAGAGCCCAAATCTGCTGCTATTAGGGAACTTCAAGAAGAAACTGGAATAATATCTGCTGAAATAATCGCCGAGGTTCATAATTGGTTGACATACGACTTCCCTCCTGCTGTGAAGGCTAAAGTAAGTCGTCTCTGGGGAGGTGAATGGCATGGACAGGCACAAAAGTGGTTTCTCATGAGATTAACAAAAGATGACAGTGAGGTCAACTTAGCTAATGGTGAAGTAGACCCAGAATTTGCAGAGTGGAAATGGGCAAACCCTGAAGAAGTTATTGAGCAGGCAGTGGACTACAAGAGACCAACCTATGAAGAAGTGATAAGAACCTTCAAGCCTTACTTTCAAGGGAATGATATTTCTTCCAAATGTAGATCAACAAAGTGGCAGTGCGAGCGACCCACAAGTGTTCTGTTGGGGGTAGCCAGCAAATATGATGGGACTCTTTGTTCTTTCCAGCGTTTTAGTGGAAACCAAATGAGAAGTATTATTGCCTTTCAAGGCAAGGGGGGATATATGGCCATTTTCAATAGAAGAACGAGGTGCCGTAATTTTTCCCCTTTAAAATTTTCAATAATGTGTTATCGACTAAAGCATAAGTTTGCAAAAAAGTTTGTGGAAATAGACCGGTCTGGTGCAAGAATCGGTTCAAAGTTGCATAATAAGGTATTTGCTCTTATGGACTATAACCTTCCTGGAAATGGAAGTGGCGAAAAGAAATCTGAAATGAATATGAAAGACACATTGGATGATTTGGACATCTCCTTGATATGTAAGCGATTTCCATCAATTACTTTGGGTAATGCTCCTCAAGTGGATTTGTACGACGGGACTACACCATATTCTGAAATGACGAGCATTTTAGCGACAGATGATTTTGGAAAATATTTTTCTGACCCTTCAGCGACAAGGTGGGTGCAAAATCCTCTCTCTGAAGCACTGCCTTCTCTGTTTGTCAACCATTCTAGTGTAACATCTTCCACCTTAAGAACAGAAGATTCCTTTCCTTGTCCTTTGTCACCTGATTCAATGTCTTCAATATATGAAGAAAACTTGGACAATCAAGTCACCAGGGAGATCTCTCAAGAGAAAGAGGGGCTGCAGTCACCGTCAAACGCTTCACTCAATGAGTTATTTCTTGACAAACCTATCAGTTTCTTACCTGGATTACGTAAGAGGCTCTACCAACAGCTAGATGACTCTGGGTTTCACACGTTACGGAAAATGCTGCACCATTTTCCACGATCATATGCTAATCTACAGAATGCACATGCTGAAATTGATGATGGGCAGTACTTGATATTTGTTGGAAAAGTCTTATCTTCAAGGGGAGTCAAAGCTAGTTGTTCATTTTCATTCATTGAGGTGGTTGTGGGTTGTCAGGTTTCTGACAGCGAATCAGCTTCTGACCATTTGACTAGCAATGCAAATGAGAGGCCAGAGAAGACAATTTATTTGCATTTAAAGAAATTTTTTCGCGGTGCACGTTTTACATTTATGCCCTTCCTTAAAAGTCTTGAAAAAAAGTATCAAGAGGGAGACATAGCATGTGTGAGTGGCAAGGTCAGGACTATGCGTTCTAAAGATCACTATGAGATGAGAGAATATAATATTGATGTGCTTGAAGATGGAAAAGATTTATCATTTTGTGCTAGAGAGAGGCCATATCCTATCTACCCTTCAAAAGGGGGTTTGAAGCCACTTTTTCTGAGGGACATTATTGCAAGAGCTTTACAAGCCTTGCCTGTCAATGTTGATCCAATTCCTAAAGATATTGTCAAACAATTTGGACTGTTAACTCTTCATGATGCATATTTTGGGATCCACAAACCGAACAACATCAAAGAAGCTGATTTGGCCCGCAAGAGACTTATATTTGATGAATTCTTTTATTTGCAGCTAGGACGCTTATTCCAAATGCTTGAAGGAGTTGGTACCCAAATAGAAAGGGATGGATTGCTAGATAAGTATAGAAGACCGAAAAATAATACTTTGTGTACAGAGGAATGGTCCTGTCTCACCAAGAAATTTTTGGAGATTCTTCCATATACTCTTACTTCTAGTCAACAGCATGCTGTTTCAGAAATCATTTGGGATCTTAAAAGGCCAGTTCCCATGAATCGGCTACTGCAGAGCCTAAAGAGAGACAACCCTAAATCCATGCCTGTCGGGTGGGCCCACTTTTCTCTGGTGAAAACTTTAGTCACCTTTACTGGCCAGCCATGTTTGAATTTTGATTTGCTGGTCTTTCTCTATCGTGTAATCTTTTTGGAAGAAACCATTTCATATGTTTCAGTCCACGTCCCGGCGGCTTTTCCAGCTAGCAACCCTATCCCATATTCGTCTCTTCCTGCTTGTGCCCTCGACACCTTTTCATGCGCTCTTGTACACTTCAGTGCCAACGTCTACATCTCACATTTTCCAATTGTGCTTAGCTGTGTGTTCGATAGCCTTTTGGCTGCCGCTGCTCCTGGCGATGTTGGATGTGGGAAAACTATTGTAGCTTTTCTTGCATGTATGGAGGTTATTGGCTCAGGATATCAGGCTGCTTTCATGGTTCCAACTGAGTTGCTTGCAATCCAACATTATGAACACTTGCTTAATTTGCTTGAAAACTTGGGGGAGGTCAAGTGCAAGCCAACTGTTGCATTACTTACTGGCTCAACCCCACTAAAACAATCGCGGATGATTCGTAAGGGTATCCAGACTGGTGAAATCTCAATGGTCATAGGAACCCAAAGTTTGATAGCAGAGAAAGTGGAATTCTCAGCCTTACGTATTGCTGTGGTGGATGAGCAGCATCGCTTTGGTGTGATTCAAAGAGGAAGGTTTAACAAAGCTGTTACGGATAGCTCCTCAAAAAGTGATGCTTATATGGCCCCCCATGTTCTTGCCATGTCCGCTACTCCCATCCCAAGGACACTTGCACTTGCTTTATATGGTGATATGTCACTGACACAGATAACCGACTTACCTCCGGGAAGAATTCCTGTTAAAACCTATACCATTGAAGGAAATGACAAAGGATTTGAGAATGTCTACAAGATGATGTTGGATGAGTTGGAAGATGGGGGAAAAGTTTATCTTGTCTACCCAATTATCGAACTTTCCGAGCAGTTGCCTCAGCTTCGTGCAGCTGCTGCAGATCTTGAAGTTATATCAAGCCGGTTTGAAGGATATAATTGTGGTTTATTACATGGAAAAATGAAAGGCGATGAAAAAGAAGAAACATTAAGAAAGTTTAGGTCCGGAGAACTGGATATACTACTTGCTACTCAAGTAATTGAGATCGGTGTTGATGTTCCAGATGCGTCTATGATGGTTGTGATGAACTCTGAGAGGTTTGGAATTGCTCAACTACACCAACTCAGAGGGCGAGTTGGACGTGGGGTTAAGGCGTCAAAATGTATACTAGTTGCGTCAACTTCGAGTAGCCTCAGTCGATTGAAAGTTTTAGAGAGATCGTCAGATGGCTTTCATCTTGCTAATGTGGATCTTTTGTTACGTGGACCTGGTGACTTGCTTGGCAAGAAACAATCTGGACATCTTCCTGAATTTCCTGTTGCTAGATTGGAAGCTGATGGAAATATTTTGCAAGATGCACACATTGCAGCACTGAAAATTTTAAGTGCTTCTCATGATTTGGAGCGATTTCCCGCGCTTAAACTCGAGCTTAGCATGAGACAGCCACTTTGCCTGCTAGGGGATTAA 3843 0.4192 MEGLPQGYRPNVGVCLINSEDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELQEETGIISAEIIAEVHNWLTYDFPPAVKAKVSRLWGGEWHGQAQKWFLMRLTKDDSEVNLANGEVDPEFAEWKWANPEEVIEQAVDYKRPTYEEVIRTFKPYFQGNDISSKCRSTKWQCERPTSVLLGVASKYDGTLCSFQRFSGNQMRSIIAFQGKGGYMAIFNRRTRCRNFSPLKFSIMCYRLKHKFAKKFVEIDRSGARIGSKLHNKVFALMDYNLPGNGSGEKKSEMNMKDTLDDLDISLICKRFPSITLGNAPQVDLYDGTTPYSEMTSILATDDFGKYFSDPSATRWVQNPLSEALPSLFVNHSSVTSSTLRTEDSFPCPLSPDSMSSIYEENLDNQVTREISQEKEGLQSPSNASLNELFLDKPISFLPGLRKRLYQQLDDSGFHTLRKMLHHFPRSYANLQNAHAEIDDGQYLIFVGKVLSSRGVKASCSFSFIEVVVGCQVSDSESASDHLTSNANERPEKTIYLHLKKFFRGARFTFMPFLKSLEKKYQEGDIACVSGKVRTMRSKDHYEMREYNIDVLEDGKDLSFCARERPYPIYPSKGGLKPLFLRDIIARALQALPVNVDPIPKDIVKQFGLLTLHDAYFGIHKPNNIKEADLARKRLIFDEFFYLQLGRLFQMLEGVGTQIERDGLLDKYRRPKNNTLCTEEWSCLTKKFLEILPYTLTSSQQHAVSEIIWDLKRPVPMNRLLQSLKRDNPKSMPVGWAHFSLVKTLVTFTGQPCLNFDLLVFLYRVIFLEETISYVSVHVPAAFPASNPIPYSSLPACALDTFSCALVHFSANVYISHFPIVLSCVFDSLLAAAAPGDVGCGKTIVAFLACMEVIGSGYQAAFMVPTELLAIQHYEHLLNLLENLGEVKCKPTVALLTGSTPLKQSRMIRKGIQTGEISMVIGTQSLIAEKVEFSALRIAVVDEQHRFGVIQRGRFNKAVTDSSSKSDAYMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVKTYTIEGNDKGFENVYKMMLDELEDGGKVYLVYPIIELSEQLPQLRAAAADLEVISSRFEGYNCGLLHGKMKGDEKEETLRKFRSGELDILLATQVIEIGVDVPDASMMVVMNSERFGIAQLHQLRGRVGRGVKASKCILVASTSSSLSRLKVLERSSDGFHLANVDLLLRGPGDLLGKKQSGHLPEFPVARLEADGNILQDAHIAALKILSASHDLERFPALKLELSMRQPLCLLGD 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1038 1280 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 869 1280 - -
Lal6g1038 1280 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 197 755 - -
Lal6g1038 1280 Gene3D - 686 756 IPR027417 -
Lal6g1038 1280 PRINTS NUDIX hydrolase family signature 35 49 IPR020476 -
Lal6g1038 1280 PRINTS NUDIX hydrolase family signature 49 64 IPR020476 -
Lal6g1038 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 890 1187 IPR027417 -
Lal6g1038 1280 SUPERFAMILY Nudix 7 157 IPR015797 -
Lal6g1038 1280 Hamap RNA pyrophosphohydrolase [rppH]. 2 160 IPR022927 -
Lal6g1038 1280 Gene3D - 865 1040 IPR027417 -
Lal6g1038 1280 Pfam NUDIX domain 8 149 IPR000086 -
Lal6g1038 1280 ProSiteProfiles Nudix hydrolase domain profile. 7 153 IPR000086 -
Lal6g1038 1280 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1056 1211 IPR001650 -
Lal6g1038 1280 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 869 1032 IPR014001 -
Lal6g1038 1280 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 869 1280 - -
Lal6g1038 1280 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 197 755 - -
Lal6g1038 1280 Gene3D - 1042 1213 IPR027417 -
Lal6g1038 1280 Pfam Helicase conserved C-terminal domain 1058 1174 IPR001650 -
Lal6g1038 1280 SUPERFAMILY Nucleic acid-binding proteins 423 626 IPR012340 -
Lal6g1038 1280 Pfam DEAD/DEAH box helicase 869 1017 IPR011545 GO:0003676|GO:0005524
Lal6g1038 1280 SMART ultradead3 855 1043 IPR014001 -
Lal6g1038 1280 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 1200 1258 IPR045562 -
Lal6g1038 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 755 IPR027417 -
Lal6g1038 1280 CDD Ap4A_hydrolase_plant_like 7 155 IPR022927 -
Lal6g1038 1280 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 159 - -
Lal6g1038 1280 SMART helicmild6 1078 1175 IPR001650 -
Lal6g1038 1280 ProSitePatterns Nudix box signature. 40 61 IPR020084 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1038 Lal-Chr6 7490041 7511133 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1038 6 7490041 7511133 Lal6g1038 6 7490041 7511133 ECH