Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1011 ATGAACCAAATAACCCTCTTTATCCCCTTCTTCTTTCTCATACTTAGAATCTCTTTCTGTTATCCGGATCCAAAGTTCTTAGCTTGCCAACCCATGACATGTGGTAATAACCAAAACATAAGCTACCCATTCTACATCATAGATAAACAAGAACCTTTTTGTGGGAACCCAGGTTTTGAACTCACTTGTAATAACAATGGTTTCCCAATCCTTAGTCTTATAAATACAACGTATATAGTCCAAGAAATCTTCTACAACAACCACACACTCAGATTATCCAACGTTGTGTTCTCAGAGTCAACCACTTCTGATCACTGTATTGATCAAATAAAGAATCTCTCGGTTGGAAAATACAGGTTCTATGTTGCTCCAAACCAAAGTGACGTGTTATTGTTCTATGGCTGCGACTTAACGTCGCTGCCGGAGAGTTTGAAAGCGAACAAAATTGGGTGTTCACAGGAAAACAAAACTAGTTCAGTTGTGGGTTCATATAGGGAAGATAAGAGTCTGAGAGAAGCGTGCAAGGGTGATGTGGTGAATGTAACAGTGGAAGATGTTGAAGGAGAGATTAAAGAAGCACTGAGAAAAGGGTTTGTGTTGAATTGGAATGCTAGTAATTGTAGTGTTTGTACAAACAGTGGAGGGAGGTGTGGGTTTGATTTAGATACTGATACTTATGCTTTTAGGTGTTATTGTCCTGATAGACCTCATGTTGTTGATTGTGGTCAAGATGCAGAGGCAAAGAAGTTGAGTAGGGCAGAGAAAATTGTCATTGGTTTAAGTGTTGGACTTGTAAGCATCTTCATAGTTTTATTGCTCCTACTCTACAAAAGAAAACATGGTTCATCAGGTAGTCAATTCCAAACAACAAATTCTTATTCTGATCCTTCCTCAACTCCAGATGCAGAAAATGGCAATGTGTACTTTGGAATTCCCCTCTTCTCTTATAAGGAGCTTCAAGAAGCAACGAGCCATTTCGACCAAGATAAACAAATCGGAGATGGAGGCTTTGGAACTGTCTACTATGGGAAACTCCAAGATGGACGCGAAGTTGCTGTGAAGCGCTTATACGAACACAACTACAGGCGAGTAGAACAGTTCATGAATGAAATTCAGATCCTCACACGATTGCGCCACAAAAATCTTGTGTCCCTCTATGGCTGCACTTCAAGGCAGAGCCGCGAACTACTGCTCGTGTATGAGTACATTTCGAATGGAACTGTTGCGTCTCATCTCCACGGTGAATTAGCGAAACCTGGCTTATTACCATGGTCTATAAGAATTAAAATTGCCATAGAGACGGCCAGTGCATTGGCTTATCTTCATGCCTCTGAGATCATTCACCGTGACGTGAAAACCAACAACATTCTCCTTGACAGCAGTTATTGTGTTAAAGTTGCAGATTTTGGTCTTTCAAGACTATTCCCGAACGATGTCACACATGTTTCCACGGCACCACAAGGGACTCCGGGTTACCTTGATCCGGAATATTACCAATGCTACAAGCTTACTAGCAAGAGTGATGTATATAGCTTTGGAGTGATGCTCATTGAGCTAATATCATCTCAACCAGCTGTTGATATGGACAGGCATAAGGGGGAAATAAACTTGTCAAGTTTAGCTATAAAGAAGATTCAAGAGAGTAAATTTAGCGAACTTGTCGATCCTCATCTTGGTTTTGATTCGGACAATGAGGTTAAGAGGATGATAATTTCGGTCGCGGAATTGGCTTTTCAATGTTTACAACGCGACAAGGAATTAAGACCTTCCATGAATGAAGTGTTGGATGTGCTAAAGAGAATTGAAAGTGAGAAGAATCAAGAGGAAGCAGATGTTTACAGTGCAGGTGCTTCACACTCGGAATGGGATCAAGTTGGTTCATTGAAGGATGTGAACCAACCTTCTTCACCAATTACAGTTACAGATAACTGGGAAAGTCAAACTACCACTCCTAATGTATTGCAAGAATCTGTGATGCAAACAGCTGAAAATGAAAATAAACATCCTATGCAGTGTCCTAGGTCTTTTGAGTGTGGAATTCTAGGGAACATTCACTACCCCTTCACAAACACAACTCACTCAGAATGTGGCTTAGTCATAAGGGGTTGTGACAATCACACTGCAGATAAAGAAATCTCACTCAAAAACCAATGGTATATAATTGAAACAATCCTTCAGAAGAAGTATGAGTACAACTTAGTTTTCATCCGTTACCCAAAGTTTGAAGGTGTTTCACCAATATGCACTGCATTCAACTATAATGTCAGTGACATTATTGTTCCTCATGAATCTCCTATGATGTCTTTGCAGATACTAAACACTTTTGAATTCATTAGATGCAATCATGACCCCAATAACCATGATGTCAATGAAAACCTTTCACTAAATTATAACTGTAGTGACTATGATGTCTATGGTTATGATCATGAACTTTCAGATGGATGCTCAGCTATTCAGCTTCCAGTTCCACTGTCCCCTATTTTGATTGACCCATGGAATTTAACATTAAGTTCCGAGCTCGTTGTTGAAGTAACATTATCCGAACTTTGTTTTGATTGCTATCATGTAAGAGGAGGCCAATGCAGAGCAGCCAAAGAAAACATCTTGTGTGTCAACACCGATGATGATCGACAACAACAACAACATCCAAGCTTTGCCATTGGTATATCTATTGGATTGGCAATCATGATTATAATTGCCTTGTTTATTATTCTCCTTATGTACAAAAGAAGGTCCAACAATTCTTCATGCTACCAAAACCAACCAATAAACATTAATTCTGGCCCCTCCTCAAATGTTACCACAGAAACTGGAACTTTGATCTACTTCGGAGTCCCCGTTTTCTCCTACGAGGAGCTTGAAGAGGCAACAAATAATTTTGACCCAGCTAGAGAGCTTGGCGAAGGAGGGTTTGGGATTGTTTACTATGGAAAGATTCGAGATACACGTGAAGTTGCAGTGAAGCGCCTATACGAGCACAAGTACAAGCCAGTAGAATCATTCATAAATGAAATTCAGATCCTCACACGCCTGCACCACACGAATCTTGTGTCCCTCTATGGCTGCACTTCTCGTCACAGCCACGAGCTGCTGCTAGTGTACGAATATGTCCCGAATGGCACTCTTGATTCTCATCTTCATGGTGATAAGGCAAAGCCTGGCCTAATGCCATGGCATGTGAGAATGAAAATTGCCATAGAGACTGCTAGTGCATTGTGTTACCTCCATGCTTCGGACATCATTCACCGAGATGTGAAAACCAGCAACATTCTACTCGAGAATAACTTTTGTGTCAAAGTTGCAGATTTTGGGCTTTCAAGACTTTTTCCTATTGATGTCACACATGTTTCCACAGCTCCTAGGGGAACCCCGGGTTACGTTGACCCGGACTATCATATATGCTACCAGCTTACGAGCAAGAGTGATGTTTATAGCTTTGGAGTTGTTCTAGTTGAGCTAATATCATCTTTACCAGCAGTTGATATGAATAGGGAGAGAGATGAGGTTAAGCTGGCAAATCTAGCCTTAAAGAAGATTCAAACAAAGGCGTTTACGGAGTTGGTTGATCCTTCCCTTGGTTTTCAGTCTGATCAGAACTTGAAAAGGATGATAACTTCTGTAGCAGAATTGGCTTTTCAGTGTTTGCAAAGGGACAAGGATTTAAGACCCTCAATGGGTGAAGTATTGGAGGTGTTGCAGAGAATTGAAAGTAGTAATGATGTGCCACGGAATATAGAGGGAATTGATGTTCATTGTGCTGAAACTTCCCATAGCTATGCACTTCCAAACACTCTGATGAAGCCACAGCGCCTTCACCAAACACTATGA 3828 0.4078 MNQITLFIPFFFLILRISFCYPDPKFLACQPMTCGNNQNISYPFYIIDKQEPFCGNPGFELTCNNNGFPILSLINTTYIVQEIFYNNHTLRLSNVVFSESTTSDHCIDQIKNLSVGKYRFYVAPNQSDVLLFYGCDLTSLPESLKANKIGCSQENKTSSVVGSYREDKSLREACKGDVVNVTVEDVEGEIKEALRKGFVLNWNASNCSVCTNSGGRCGFDLDTDTYAFRCYCPDRPHVVDCGQDAEAKKLSRAEKIVIGLSVGLVSIFIVLLLLLYKRKHGSSGSQFQTTNSYSDPSSTPDAENGNVYFGIPLFSYKELQEATSHFDQDKQIGDGGFGTVYYGKLQDGREVAVKRLYEHNYRRVEQFMNEIQILTRLRHKNLVSLYGCTSRQSRELLLVYEYISNGTVASHLHGELAKPGLLPWSIRIKIAIETASALAYLHASEIIHRDVKTNNILLDSSYCVKVADFGLSRLFPNDVTHVSTAPQGTPGYLDPEYYQCYKLTSKSDVYSFGVMLIELISSQPAVDMDRHKGEINLSSLAIKKIQESKFSELVDPHLGFDSDNEVKRMIISVAELAFQCLQRDKELRPSMNEVLDVLKRIESEKNQEEADVYSAGASHSEWDQVGSLKDVNQPSSPITVTDNWESQTTTPNVLQESVMQTAENENKHPMQCPRSFECGILGNIHYPFTNTTHSECGLVIRGCDNHTADKEISLKNQWYIIETILQKKYEYNLVFIRYPKFEGVSPICTAFNYNVSDIIVPHESPMMSLQILNTFEFIRCNHDPNNHDVNENLSLNYNCSDYDVYGYDHELSDGCSAIQLPVPLSPILIDPWNLTLSSELVVEVTLSELCFDCYHVRGGQCRAAKENILCVNTDDDRQQQQHPSFAIGISIGLAIMIIIALFIILLMYKRRSNNSSCYQNQPININSGPSSNVTTETGTLIYFGVPVFSYEELEEATNNFDPARELGEGGFGIVYYGKIRDTREVAVKRLYEHKYKPVESFINEIQILTRLHHTNLVSLYGCTSRHSHELLLVYEYVPNGTLDSHLHGDKAKPGLMPWHVRMKIAIETASALCYLHASDIIHRDVKTSNILLENNFCVKVADFGLSRLFPIDVTHVSTAPRGTPGYVDPDYHICYQLTSKSDVYSFGVVLVELISSLPAVDMNRERDEVKLANLALKKIQTKAFTELVDPSLGFQSDQNLKRMITSVAELAFQCLQRDKDLRPSMGEVLEVLQRIESSNDVPRNIEGIDVHCAETSHSYALPNTLMKPQRLHQTL 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1011 1275 MobiDBLite consensus disorder prediction 627 647 - -
Lal6g1011 1275 Gene3D Phosphorylase Kinase; domain 1 299 402 - -
Lal6g1011 1275 Gene3D Phosphorylase Kinase; domain 1 934 1036 - -
Lal6g1011 1275 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g1011 1275 CDD STKc_IRAK 332 601 - -
Lal6g1011 1275 ProSitePatterns Protein kinases ATP-binding region signature. 966 988 IPR017441 GO:0005524
Lal6g1011 1275 Coils Coil 591 611 - -
Lal6g1011 1275 Pfam Protein tyrosine and serine/threonine kinase 964 1231 IPR001245 GO:0004672|GO:0006468
Lal6g1011 1275 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 646 IPR044652 -
Lal6g1011 1275 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 658 1243 IPR044652 -
Lal6g1011 1275 Pfam Wall-associated receptor kinase galacturonan-binding 29 93 IPR025287 GO:0030247
Lal6g1011 1275 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Lal6g1011 1275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1080 1092 IPR008271 GO:0004672|GO:0006468
Lal6g1011 1275 Gene3D Transferase(Phosphotransferase) domain 1 1037 1246 - -
Lal6g1011 1275 SUPERFAMILY Protein kinase-like (PK-like) 944 1244 IPR011009 -
Lal6g1011 1275 SUPERFAMILY Protein kinase-like (PK-like) 304 598 IPR011009 -
Lal6g1011 1275 ProSiteProfiles Protein kinase domain profile. 960 1235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g1011 1275 Pfam Wall-associated receptor kinase C-terminal 161 234 IPR032872 -
Lal6g1011 1275 Coils Coil 1162 1182 - -
Lal6g1011 1275 SMART serkin_6 960 1235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g1011 1275 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g1011 1275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Lal6g1011 1275 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 646 - -
Lal6g1011 1275 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 658 1243 - -
Lal6g1011 1275 Gene3D Transferase(Phosphotransferase) domain 1 403 621 - -
Lal6g1011 1275 Pfam Protein kinase domain 327 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1011 Lal-Chr6 7232646 7243254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1011 206 653 Receptor kinase-like Gene Family AT1G25390 56.140 1.09e-160 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lal6g1011 PK_Tyr_Ser-Thr 7.6e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1011 6 7232646 7243254 Lal6g1011 6 7232646 7243254 ECH
Lal6g1011 6 7232646 7243254 Lal18g0619 18 5324975 5330847 ECH