Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0838 ATGCCTGAGATCAATAAGGACCAGAACATAAGGCTTTTTGGCAGAACTATTTCCCTGCCACTCAACAAAACCAATGATTCTTCTTCTGAACATGCTCCTTCTCTTCTTCATGAAGATCACAGTCCTCCTCCATCACCATCTTCTCCACGTGAATTGATCTCTGCAACAGAACATGATGCAGAAAATGATAAGAAGCTACGAGGAGCTACTTTTGAACCATCGACTAAAAAACTCGTCTTAGATGAAGATGATGAGGTCACAATTCAAACCAAAGAGGATTTAAAATCTCCTACATGTTCAAGCATTTATGAGAACCCGAAGACTCCTTCAGCAGAAAGAGAGTCTTCTTTAGTGAAATCCTCTAAAAATGGAGAACAAAGCGAGACAAGTGTATCACATGACAAAACTCTAAAGAAACCAGACAAGATACTTCCTTGCCCACGATGCAACAGCATGGACACCAAATTTTGTTACTACAACAATTACAATGTCAACCAGCCCCGTCACTTCTGCAAGAAGTGCCAGAGATACTGGACTGCTGGAGGAACGATGAGAAATGTTCCGGTAGGCGCAGGTCGCCGCAAGAACAAAGGCTCGCTTTCTTCCGCCTCACATTATCACCAAATAATGATTCCCGAGGCCCTTCAAACAGCGAAACTCAATGGATTACACAACGGTATGTTAGGAAATGGAGCAGCTGTCTTGACCTTTGGATCAGATTCTCCTCTTAGTGATTCAATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACACAAAATGGTGTAGTCCTAAATGGGTTTCATGCACCCAAGCAGAATGTTTTTGTTCCCTATGATAAAAAAGAAAACAACGGGGATGATAATTCAGTTGGAGCTTCTGTTGTGGCTTCAACTTCATCTGACAACAAAGGCCATGGTGGCTCACATGAATCAATGGATAAGAGTTTTCAAGTTTTCCCTCCTCAATTGCCATGCTTCCAAGGTTCTTCTTCGCCTTGGCCTTATCCGTGGAACCCGGCAATGCCTCCGCCTCCATTTTACCAACCAGGTTATCCTATGTCATTCTATCCTACACCTCCATATTGGGGTGTTAATGTTATGCCACCACCCTCTTGGAGTGTAAACCCTATCTCTCCTCACTCTCATTCTACCACGATCTCTAGCCCGAACTCACCGACCTTAGGGAAACACTCAAGAGACGGGAACATACTCTCTCCAACTTCACCGAAAGAAAATCCTAGTACAGAAACTAGTAGTGATAACAACAACTCAGAAAATAGTGTCTTGATTCCCAAGACACTGAGAATCGACGATCCCGGTGAAGCTGCTAAGAGTTCTATATGGTCAACACTAGGGATAAAAAACGATGGAGGTATTTTCAAAGCATTCCCATCATCCAAAGGTGGTGACAAGAATCATGTAGTTGAAGCATCACCATTGTTGCATGCTAACCCTGCTGCTTTATCAAGGTCTCTTACCTTTCATGAGAGAACCTAG 1494 0.4324 MPEINKDQNIRLFGRTISLPLNKTNDSSSEHAPSLLHEDHSPPPSPSSPRELISATEHDAENDKKLRGATFEPSTKKLVLDEDDEVTIQTKEDLKSPTCSSIYENPKTPSAERESSLVKSSKNGEQSETSVSHDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKGSLSSASHYHQIMIPEALQTAKLNGLHNGMLGNGAAVLTFGSDSPLSDSMASVLSLAEKTQNGVVLNGFHAPKQNVFVPYDKKENNGDDNSVGASVVASTSSDNKGHGGSHESMDKSFQVFPPQLPCFQGSSSPWPYPWNPAMPPPPFYQPGYPMSFYPTPPYWGVNVMPPPSWSVNPISPHSHSTTISSPNSPTLGKHSRDGNILSPTSPKENPSTETSSDNNNSENSVLIPKTLRIDDPGEAAKSSIWSTLGIKNDGGIFKAFPSSKGGDKNHVVEASPLLHANPAALSRSLTFHERT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0838 497 MobiDBLite consensus disorder prediction 54 91 - -
Lal6g0838 497 Pfam Dof domain, zinc finger 141 197 IPR003851 GO:0003677|GO:0006355
Lal6g0838 497 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 497 - -
Lal6g0838 497 MobiDBLite consensus disorder prediction 286 304 - -
Lal6g0838 497 MobiDBLite consensus disorder prediction 377 434 - -
Lal6g0838 497 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Lal6g0838 497 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Lal6g0838 497 MobiDBLite consensus disorder prediction 377 429 - -
Lal6g0838 497 MobiDBLite consensus disorder prediction 92 127 - -
Lal6g0838 497 MobiDBLite consensus disorder prediction 17 139 - -
Lal6g0838 497 PANTHER CYCLIC DOF FACTOR 2 5 497 IPR045174 GO:0003700|GO:0006355
Lal6g0838 497 MobiDBLite consensus disorder prediction 279 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0838 Lal-Chr6 5663801 5667535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0838 7 495 C2C2-Dof Transcription Factor Family AT5G39660 40.748 4.37e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal6g0838 zf-Dof 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0838 - - gmx:100813315 509.99