Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0805 ATGGTTTTGAATAGTGGGGGAGGTGGAAATGAAGGAGCTAAGCTCAAAACAATAACAGTTGGAGATTCTGACCTTTCACTTCCTTTTTATTCTATTTTCATCCATGCTGCATGGAATTCTCCTCCAACTACAACACTACCAACAAGAGAGAAAGAGAAAAAGTCATGGTTTGCTGATCTTTGTTTTCTGCCCCTTATATACACATTTGGATCGGACTCATTTAGATCAATTAATCAATCAATGGAGGAGAAAAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGGAAATCACTGGGTGGTCACATCAGGACACATATGAATGAACATTCAGCTCAAGCCAATGAAGAGAGAAGCAATGCTGCTATGCTCAAGTTTGATGCTATGAGAAAGAAGAAGAGAGATTCATTAGGGTATGGTGATGGTGATGGTTCTGCTGGAAACCCCACTTATGGCCTCAGAGAGAACCCTAAGAAAACAATGAGGTTTGTGCATTCCAATACCAATAAGAATATGCAGCAGCAGCAACTAGGCAAGTTCTGCAAAGAATGTGGGAAAGGTTTCTCATCATTGAAAGCTCTTTGTGGTCACATGGCTTGTCACTCAGAGAAAGAGAAGCAGAAATTGGTTATGGATATTCAATCTGATACTGAGACCAATTCTGTTCCAAGGAGATCCAAGAGAATGAAGTTCAACAACATTAGCAGCAGTAGCAACAACAACAACAACAAAAATTATCTTTCTTATTCTTTGGCTAATGGATCTTCTTCTGTGTCAGAGGTTGAGCAGGAACAGGAAGAAGTTGCTAGGTGTTTGATGATGTTGTCCAAAGACTCTAGTTACCATCATAGTGGTCGTTTTGCTTTGTTTGCTGAGTCTTCTGATAACAACTCTGTTATTCTAGAGGCAAAATCACCTTCTCTTGAGACAAAGTTCACTACAAAAAATGGTAAGAATTCTGTGTCTAATGCTTATGAATTTGCGGAGAAGAATCTGCGAAAGGACTCGAAATTGAAGTCTACTGAGATTGGTTATCAATCTGATAATTCAGATTCCGGGTATTTCAAATACAGACCCAAAAAGGTAGACTCAGATGACTCAAATGATGGGGTTTTCAGGAGTGAAGTTAAGTCTTCTAAAGTGGGAGACATGGCTGAGTTTGATGATTATGATGTTGAATTAAGCAAGGTTCTCAACAGAGGAAGAAGCAGAAACACTGAATTTAAGAAATTAGTGTTGGAGGAAGAAGCAGATACAAAGAGATTTGCTTCAAAGAAGAGACTTATCTATGATTCTCTTGGTTCAAAGAAGGTTGCAAATGGTTTTAATGATGAAGTTTATAAGAGGAATGGATTGAAGTATGAGTCCTTGAACACTGAAAGAGACAATGAATATGAAGATGATTCAGCATATGAGAGTGATGAAAACAGTTCTGATAGTGATTCTTATCCTGCTGCAAAGCCTCACAACAACAAGAACCTCAATGGGAAGAAGTTAAGTAGGGGAAAGAAGAAGAAGAAGAAGAAGAATCTGAAGTCAAAGAAAACCAAGGAACACCAATGTCCAATTTGCAACAGAGTTTTCAGTTCAGGCCAAGCATTGGGAGGCCACAAAAGGTCCCATTTTGTTGGAGGTTATGAAGAAAACACTCTTGTGATTAGACCAGCTGGTGCACCTTGCCTAATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1725 0.3913 MVLNSGGGGNEGAKLKTITVGDSDLSLPFYSIFIHAAWNSPPTTTLPTREKEKKSWFADLCFLPLIYTFGSDSFRSINQSMEEKKFVCKYCSKRFPCGKSLGGHIRTHMNEHSAQANEERSNAAMLKFDAMRKKKRDSLGYGDGDGSAGNPTYGLRENPKKTMRFVHSNTNKNMQQQQLGKFCKECGKGFSSLKALCGHMACHSEKEKQKLVMDIQSDTETNSVPRRSKRMKFNNISSSSNNNNNKNYLSYSLANGSSSVSEVEQEQEEVARCLMMLSKDSSYHHSGRFALFAESSDNNSVILEAKSPSLETKFTTKNGKNSVSNAYEFAEKNLRKDSKLKSTEIGYQSDNSDSGYFKYRPKKVDSDDSNDGVFRSEVKSSKVGDMAEFDDYDVELSKVLNRGRSRNTEFKKLVLEEEADTKRFASKKRLIYDSLGSKKVANGFNDEVYKRNGLKYESLNTERDNEYEDDSAYESDENSSDSDSYPAAKPHNNKNLNGKKLSRGKKKKKKKNLKSKKTKEHQCPICNRVFSSGQALGGHKRSHFVGGYEENTLVIRPAGAPCLIDLNLPAPVDE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0805 574 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 81 574 - -
Lal6g0805 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Lal6g0805 574 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Lal6g0805 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 521 543 IPR013087 -
Lal6g0805 574 SUPERFAMILY beta-beta-alpha zinc fingers 182 543 IPR036236 -
Lal6g0805 574 Pfam C2H2-type zinc finger 521 543 - -
Lal6g0805 574 Pfam C2H2-type zinc finger 86 109 - -
Lal6g0805 574 Pfam C2H2-type zinc finger 183 205 - -
Lal6g0805 574 MobiDBLite consensus disorder prediction 137 157 - -
Lal6g0805 574 MobiDBLite consensus disorder prediction 478 495 - -
Lal6g0805 574 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 81 574 - -
Lal6g0805 574 MobiDBLite consensus disorder prediction 460 520 - -
Lal6g0805 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
Lal6g0805 574 MobiDBLite consensus disorder prediction 496 517 - -
Lal6g0805 574 Gene3D Classic Zinc Finger 72 139 - -
Lal6g0805 574 ProSitePatterns Zinc finger C2H2 type domain signature. 523 543 IPR013087 -
Lal6g0805 574 SUPERFAMILY beta-beta-alpha zinc fingers 82 113 IPR036236 -
Lal6g0805 574 SMART c2h2final6 86 108 IPR013087 -
Lal6g0805 574 SMART c2h2final6 181 203 IPR013087 -
Lal6g0805 574 SMART c2h2final6 521 543 IPR013087 -
Lal6g0805 574 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0805 Lal-Chr6 5401219 5403531 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal6g0805 zf-C2H2_6 9.9e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0805 6 5401219 5403531 Lal6g0805 6 5401219 5403531 ECH