Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0804 ATGGTGAAAATTTGCTGCATTGGAGCCGGGTATGTCGGTGGTCCAACCATGGCTGTCATTGCCTTGAAGTGTCCTGAGATTGAGGTAGTTGTGGTGGATATTGCTGCACCACGAATTAATGCCTGGAACAGCGACCAACTCCCGATCTATGAGCCAGGCCTTGATGATGTGGTGAAGCAGTCCAGGGGGAGGAACCTTTTCTTCAGCACTGATGTGGAGAAACATGTTGCTGAGGCTGATATAGTCTTTGTTTCGGTGAACACCCCTACCAAAACTCAGGGACTTGGAGCTGGCAAGGCAGCTGATCTGACTTATTGGGAGAGTGCTGCTAGGATGATTGCCGATGTTTCAAAATCGGACAAAATTGTGGTTGAGAAATCAACTGTCCCTGTTAAAACAGCCGAAGCAATTGAGAGGATTCTGACTCACAATAGAAAAGGAATCAATTTTGACATTCTTTCTAACCCTGAATTTCTTGCTGAGGGTACAGCAATTGCAGACCTGTTTAACCCTGATCGAGTCCTTATCGGAGGCCGGGAGACCCCTGGAGGTCAAAAGGCTATTAAGACTTTGAAAGATGTTTATGCTCATTGGGTCCCCGATGAGAGAATCCTTTGTACCAATTTGTGGTCTGCTGAACTATCAAAGCTTGCTGCCAATGCTTTCCTAGCACAGAGGATCTCCTCTGTGAATGCTATGTCTGCACTCTGTGAGGCAACTGGTGCTGATGTCTCTCAGGTATCCCATGCAATTGGCACAGACTCGAGAATTGGACCCAAGTTCTTGAATGCTAGTGTTGGATTTGGAGGCTCCTGCTTCCAGAAGGACATATTGAACTTGGTCTATATCTGTGAGTGCAATGGCCTTCCTGAGGTAGCCAACTACTGGAAACAGGTCATTAAGGTGAATGACTACCAGAAAAACCGGTTCGTTAACCGAGTTGTTTCTTCAATGTTCAACACAGTCTCGGGAAAGAAAATTGCTATCTTGGGTTTTGCTTTCAAGAAGGATACTGGTGACACTAGGGAAACCCCAGCCATTGATGTGTGCAAGGGACTGTTGGGAGACAAGGCTAATCTGAGCATATATGATTCTCAGGTCACTGAAGAACAAATTCTGAAGGATCTGACCATGAGGAAGTTTGATTGGGATCATCCTGCTCATCTTCAACCATCAAGCCCGCCGACTTCAAACAAGCAAGTTTCTGTGGTTTCTGATGCCTATGAGGCAATCAAGGATGCACATGGTATCTGTATCTTGACTGAGTGGGATGAGTTCAGGAAGCTTGATTACCAAAAAGTTTATGAAAACATGCAGAAGCCGGCATTCGTATTTGATGGCCGTAATGTTGTGGATGCTAACAAGCTGAGGGAGATTGGGTTTATTGTTTATTCCATTGGCAAGCCACTAGACTCATGGCTCAAGGACATGCCTGCAGTGGCTTAA 1446 0.4578 MVKICCIGAGYVGGPTMAVIALKCPEIEVVVVDIAAPRINAWNSDQLPIYEPGLDDVVKQSRGRNLFFSTDVEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNRKGINFDILSNPEFLAEGTAIADLFNPDRVLIGGRETPGGQKAIKTLKDVYAHWVPDERILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKANLSIYDSQVTEEQILKDLTMRKFDWDHPAHLQPSSPPTSNKQVSVVSDAYEAIKDAHGICILTEWDEFRKLDYQKVYENMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDSWLKDMPAVA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0804 481 PIRSF UDPglc_GDPman_dh 2 468 IPR017476 GO:0016616
Lal6g0804 481 Gene3D - 241 479 - -
Lal6g0804 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 184 IPR001732 GO:0016616|GO:0051287
Lal6g0804 481 PIRSF UDPglc_DH_euk 1 481 IPR028356 GO:0003979
Lal6g0804 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Lal6g0804 481 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 1 481 - -
Lal6g0804 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 452 IPR014027 GO:0016616|GO:0051287
Lal6g0804 481 Gene3D - 1 208 - -
Lal6g0804 481 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Lal6g0804 481 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 202 IPR036291 -
Lal6g0804 481 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 449 IPR017476 GO:0016616
Lal6g0804 481 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 464 IPR036220 -
Lal6g0804 481 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 481 IPR028356 GO:0003979
Lal6g0804 481 SMART UDPG_MGDP_dh_C_a_2_a 328 453 IPR014027 GO:0016616|GO:0051287
Lal6g0804 481 Gene3D - 209 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0804 Lal-Chr6 5394165 5395610 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0804 6 5394165 5395610 Lal6g0804 6 5394165 5395610 ECH
Lal6g0804 6 5394165 5395610 Lal12g1417 12 17338507 17339949 ECH
Lal6g0804 6 5394165 5395610 Lal24g1348 24 14767625 14770778 ECH
Lal22g0705 22 5087507 5088949 Lal6g0804 6 5394165 5395610 LSH
Lal6g0804 6 5394165 5395610 Lal18g0914 18 11902228 11903673 LSH
Lal16g0805 16 5213268 5224219 Lal6g0804 6 5394165 5395610 PCT
Lal15g0779 15 5600644 5603084 Lal6g0804 6 5394165 5395610 PCT
Lal6g0804 6 5394165 5395610 Lal16g0805 16 5213268 5224219 PCT
Lal6g0804 6 5394165 5395610 Lal15g0779 15 5600644 5603084 PCT
Lal12g1417 12 17338507 17339949 Lal6g0804 6 5394165 5395610 PCT
Lal24g1348 24 14767625 14770778 Lal6g0804 6 5394165 5395610 PCT
Lal6g0804 6 5394165 5395610 Lal12g1417 12 17338507 17339949 PCT
Lal6g0804 6 5394165 5395610 Lal24g1348 24 14767625 14770778 PCT