Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0771 ATGGGTAGGGGAAAGGTGGTGCTGAAAAGGATTGAGAACAAGATAAATCGTCAAGTAACATTTGCAAAGAGAAGGAATGGATTGTTGAAGAAGGCTTATGAACTTTCTATCCTCTGTGATGCTGAGGTTGCTCTCATTATCTTCTCCAACCGTGGCAAACTCTATGAGTTCTGCAGCAGCTCTAGTTATGGTGCAAAAGAAAACAAGTCTCATTCTGGGGAACACCTAAATTGA 234 0.4145 MGRGKVVLKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSSSSYGAKENKSHSGEHLN 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0771 77 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Lal6g0771 77 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal6g0771 77 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal6g0771 77 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal6g0771 77 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal6g0771 77 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal6g0771 77 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal6g0771 77 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Lal6g0771 77 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 63 - -
Lal6g0771 77 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal6g0771 77 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 63 - -
Lal6g0771 77 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0771 Lal-Chr6 5170659 5171494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0771 1 66 MADS-box Gene Family AT2G03710 87.879 1.29e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal6g0771 SRF-TF 2.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0680 22 4814002 4826086 Lal6g0771 6 5170659 5171494 LSH