Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0722 ATGTCAGCAGCGTCGCCGTCTTCGGCATCTTCCACCGCCGCACCACCACCTACCACCACCACTCCATCACAATCTTCCCTTACACCAAACACTTCAAGTTCAACACCACCACCATCTCAGTCCCCTCCTCCAGCAACCCCATCGGCTCCTCCTCCCGCGGTGCCTCCACCGGTCCCACCATCACCGCCGCCCCCGGTCTCAGCTCCTCCACCTTCACAAGCTCCTCCTCCAACCCCACCATCATCCCCTCCTCCAATATCACCACCTCCATCTTCTCCGGTACCACCATCGCCGCCACCACCATCACCAGTCCCACCAACAAATTCTCCACCACCGTCAAGCCCACTTAATAACTCATCACCACCACCAGAGAGTTTATCCCCTCCTCCCGCCACAGCACCGCCAGCCCAAGGTTCTCCTCCATCACCAACATCCACCCCTAATTCGCCTCCCCCTCCATCACCCACGATTCGGTTGTCACCGCCTCCACCCTCGCTTGTTACGCAACCACCTTCACAAAATGGTTCAAAGAACTCAAGCCCTGGAACTGGAAGTAGTAGTGGAAAAGGAATTGGTACTACAGGTATAGTTGCTATTAGTGTTGTGGCTGGATTTTTCTTACTTGGCTTCATTGGAGTTGTTATTTGGTGCATTAAGAGGCAAAAGAAAAAGGGACCTGAGAATGGTGGTTATGTCATGCCATCCACTCTTCCCTCTTCACCTGAATCAGATTCATCATTTTTTAAGGCACATTCTTCAGCTCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTGTGTATACACCACCATCTGACCCTGGTGGACTAGGAAACTCTAGATCATGGTTTTCATATGAAGAGCTAATCAAGGCAACAAATGGTTTCTCAAGTCAAAATCTTTTAGGTGAGGGAGGATTCGGTTCTGTATATAAAGGATACCTACCTGATGGGAGAGAAATAGCAGTGAAGCAGTTGAAAATTGGTGGAGGTCAAGGGGAAAGAGAATTCAAAGCTGAAGTTGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCATTAGTGGGATACTGCATTCAAGATGATAAAAGATTGCTTGTATATCACTATGTCCCTAACAATAATCTTTATTTTCATCTTCATGAGGAAGGTAGGTCTGTGCTAAGCTGGGAAAATCGTTTTAAGATCGCAGCTGGTGCAGCTAGAGGAATAGCTTATCTCCATGAAGACTGTAATCCTCGGGTTATTCACAGGGATATCAAGTCATCGAACATTCTTTTAGATTACAATTTTGAAGCTCAAGTCTCAGATTTTGGGCTAGCAAAATTAGCTCTTGATGCATATACACATATAACCACACGTGTCATGGGAACTTTTGGGTATGTTGCTCCTGAATATGCATCAAGCGGAAAATTGACAGAGAAGTCTGATGTATATTCTTTTGGAGTCCTGCTTTTGGAACTCATTACCGGAAGGAAGTCAGTAGATACATCTCAACCCATTGGAGATGAAAGTCTAGTTGAATGGGCTCGACCTTTGTTGAGTCATGCACTTGATAATGAGGAGTATGATAGTTTGGCAGATCCAAGGCTAGAAAAGAACTATGTTGGAAGTGAAATGTTTTGCATGATTGAAATTGCTGCTGCCTGTGTACGGCATTCGGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTCGATAGCTTAGCTGCTTCAGATCTAACAAATGGAATGCGACTTGGAGAAAGCGAAGCGTTTAACTTGGCGCAACAATCTGCCCAAATAAGATTATTTCGGAAGATGGCATTTGGTAGTCAAAATTATAGCTCAGACTTTTTTAGCCAGGATAGTTTGAATACTTGA 1869 0.4569 MSAASPSSASSTAAPPPTTTTPSQSSLTPNTSSSTPPPSQSPPPATPSAPPPAVPPPVPPSPPPPVSAPPPSQAPPPTPPSSPPPISPPPSSPVPPSPPPPSPVPPTNSPPPSSPLNNSSPPPESLSPPPATAPPAQGSPPSPTSTPNSPPPPSPTIRLSPPPPSLVTQPPSQNGSKNSSPGTGSSSGKGIGTTGIVAISVVAGFFLLGFIGVVIWCIKRQKKKGPENGGYVMPSTLPSSPESDSSFFKAHSSAPLVQSGSGSDVVYTPPSDPGGLGNSRSWFSYEELIKATNGFSSQNLLGEGGFGSVYKGYLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIQDDKRLLVYHYVPNNNLYFHLHEEGRSVLSWENRFKIAAGAARGIAYLHEDCNPRVIHRDIKSSNILLDYNFEAQVSDFGLAKLALDAYTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVLLLELITGRKSVDTSQPIGDESLVEWARPLLSHALDNEEYDSLADPRLEKNYVGSEMFCMIEIAAACVRHSAAKRPRMGQVVRAFDSLAASDLTNGMRLGESEAFNLAQQSAQIRLFRKMAFGSQNYSSDFFSQDSLNT 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0722 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Lal6g0722 622 MobiDBLite consensus disorder prediction 224 248 - -
Lal6g0722 622 SMART serkin_6 295 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0722 622 MobiDBLite consensus disorder prediction 1 188 - -
Lal6g0722 622 MobiDBLite consensus disorder prediction 233 248 - -
Lal6g0722 622 PRINTS Proline rich extensin signature 11 27 - -
Lal6g0722 622 PRINTS Proline rich extensin signature 39 56 - -
Lal6g0722 622 PRINTS Proline rich extensin signature 59 84 - -
Lal6g0722 622 Gene3D Phosphorylase Kinase; domain 1 275 370 - -
Lal6g0722 622 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 619 - -
Lal6g0722 622 SUPERFAMILY Protein kinase-like (PK-like) 277 566 IPR011009 -
Lal6g0722 622 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Lal6g0722 622 ProSiteProfiles Protein kinase domain profile. 295 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0722 622 Gene3D Transferase(Phosphotransferase) domain 1 371 587 - -
Lal6g0722 622 PANTHER BNACNNG34790D PROTEIN 4 619 - -
Lal6g0722 622 MobiDBLite consensus disorder prediction 35 169 - -
Lal6g0722 622 Pfam Protein tyrosine and serine/threonine kinase 298 566 IPR001245 GO:0004672|GO:0006468
Lal6g0722 622 MobiDBLite consensus disorder prediction 170 188 - -
Lal6g0722 622 CDD STKc_IRAK 301 571 - -
Lal6g0722 622 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0722 Lal-Chr6 4820804 4824994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0722 81 617 Trihelix Transcription Factor Family AT5G38560 56.722 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal6g0722 PK_Tyr_Ser-Thr 4e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0722 6 4820804 4824994 Lal6g0722 6 4820804 4824994 ECH
Lal6g0722 6 4820804 4824994 Lal18g0568 18 4760367 4772597 LSH