Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0713 ATGAAAAAGGAAGATCAAGGGCACCCATCTTCTCAATCTATAAACAACAACATTCAAAGCTACCAAGAGCAACTACTCCTTCAACAACAACAACAACAGATGCGTAATCATCAACAAAGCAATGATATGAATAATATATTTGGAGGAGGAGCTAGAGGGTTGTTGTTCCCTCCTGAAGCTTCTCCATTATCCATGCCACCGGTTCAATCCTTCAACCTGAACCCGGTTCGAGACCTAGACCATTTTCTTGTCCCTCCTCCGGTTCCTTCACCTTATGCAAACTTTATGAACAGAAGGGTTCCTTCTCTTCAGTTTGCATATCACGATGGTCCTTCTGATCATCTTAGGATACTGTCTGATACACTTGGACCAATGGTTCAACCAGGTTCAGTTCCCTTTGGACTCCATGCTGAGTTGGGTAAGATGACTGCTCAAGAAGTCATGGATGCTAAGGCTCTTGCACAGTCTAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCTAAGCTTCGAAGCTTGTTGCCTAACACAACCAAAACAGATAAAGCTTCATTGCTGGCAGAAGTGATTGAGCATGTAAAGGAACTTAAGCGTCAAACTTCATTGATAGCAGAAACAAGTCCAGTGCCTACCGAGTCTGATGAGTTAACAGTGGACACAGCTGAAGAGGAAGGCAAGTTTGTTATCAAAGCCTCACTATGCTGTGAAGATAGGTCAGATCTGTTACCTGACCTTATCAAGACTTTGAAAGCATTAAGGTTGAGAACCCTCAAAGCAGAGATCACAACCCTTGGTGGAAGAGTGAGGAATGTGCTTTTCATCACTGGGGATAACGAGGACTCAAGTAGCAGTGGAGAGCAATGCATGCAGCATCAACAACAGTATTGTATATGCCCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAATGGTGATGAATCTGCTTCTGGGAATGTTAAGAGGCAAAGGACTAATAATATCAACATCCTTTAA 1017 0.4297 MKKEDQGHPSSQSINNNIQSYQEQLLLQQQQQQMRNHQQSNDMNNIFGGGARGLLFPPEASPLSMPPVQSFNLNPVRDLDHFLVPPPVPSPYANFMNRRVPSLQFAYHDGPSDHLRILSDTLGPMVQPGSVPFGLHAELGKMTAQEVMDAKALAQSKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIEHVKELKRQTSLIAETSPVPTESDELTVDTAEEEGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVRNVLFITGDNEDSSSSGEQCMQHQQQYCICPIQEALKAVMEKNGDESASGNVKRQRTNNINIL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0713 338 SMART finulus 160 209 IPR011598 GO:0046983
Lal6g0713 338 Gene3D - 149 210 IPR036638 GO:0046983
Lal6g0713 338 Pfam Helix-loop-helix DNA-binding domain 157 203 IPR011598 GO:0046983
Lal6g0713 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Lal6g0713 338 PANTHER TRANSCRIPTION FACTOR BHLH30 70 338 IPR045847 GO:0003700|GO:0006355
Lal6g0713 338 PANTHER TRANSCRIPTION FACTOR BHLH30 70 338 - -
Lal6g0713 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 210 IPR036638 GO:0046983
Lal6g0713 338 MobiDBLite consensus disorder prediction 319 338 - -
Lal6g0713 338 CDD bHLH_AtAIG1_like 149 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0713 Lal-Chr6 4693373 4697338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0713 16 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.196 3.27e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0713 HLH 7.8e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0713 6 4693373 4697338 Lal6g0713 6 4693373 4697338 ECH