Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0696 ATGAAAAATATGCAAAGCTTCAAGACAGCTCAAGGAAGCTCTCAACTCTATTGCCACTCCTCTTTCTTGCTTAGTGGAGATGACACTAACAGAAACCCACCACATTTTTCTGATTTTGGAGACCCTCAACATTCTGCTGCTGTGTTTCAACATGAAGATGTTGTTGATTTAAGTTCAAGTTCTATGTTTAGTGTAAAATCTAGCAATGTTGCTATTGGTGGAAGTAACATGCAATATGGAACATTGCACGCGAACCTTGGGCCTGCTGAGATTGGTTCAAGAGGGGAAGGTTGCATGGACATGTACCAGAAGGGAATTGCTATGGCCACTTTGCCTATGGCTCATAGCAATTGGGGTGATTCAGGCATAGCAGATAATAGTCAACACACTGATGATACTTCCACTGATATTGACACTGATGATAAAAACCAATGCAATAGAGCTCAGCATGGGGCAGTTATAGTTGTGGACTCCAAAGATCAGACAAAGGTCAAATATGAAGATCATAAGACACTTCGTAGGTTGGTTCAGAATCGAGAGGCTGCAAGGAAGAGTCGATTAAGGAAAAAGGCATATGTACAGCAATTAGAAAACAGCCGAGTCAAGCTTGCACAATTAGAGCAAGAGTTTCACCGAGCACGCCAACAGAGTATATTTATTGCAAATCCTGGGGATCATTGTCATTCGGCTGTTGGAAATGGTGCCTTAGCATTTGACATGGAGTATGCTCGCTGGGTTGAAGAGCATCAACGCTTGCTCAACGACCTAAAATCAGCTATAAATTCTCAAATCGGTGACAGTGATTTACATCTTCTTGTTGACAGCGTCATGGCACATTACAATGAATTAGTTAGGTTAAAGAGCGTAGGAGAGAAGGCTGATGTATTCCACATGCATAGTGGGATGTGGAAGACGCCTGCAGAGCGATTGTTTATGTGGCTTGGTGGATTTCGTTCCTCCGAACTTCTTAAGGTAGTTAAGAACCACCTTGAGCCGTTAACAGAACAACAGTTGGCGGGCATTGATAATCTGCAGCACTCTTCACAACAAACTGAGGATGCTTTATCTCAAGGCAAGGAAGCATTGCAACAATCTCTTATAGAGACACTTTCCTGCACCTCACTAGGATCCACTGGTACAGGAAATGTTGCTGATTACATGGGTCAAATGGCAATTGCGATGGACAAGCTTGCCACACTAGAGAATTTCCTTCATCAGGCTGACCTCTTGAAGCAAGGAACTCTGCAACAGCTGCAACGAATTCTGACTACACGTCAAGCTGCTCGTGCACTCATTGTTATAAACGATCACACTTCAAAACTAAGAGCGCTTAGTTCATTATGGTTAGCACGCCCTAGAGAGTAA 1365 0.4308 MKNMQSFKTAQGSSQLYCHSSFLLSGDDTNRNPPHFSDFGDPQHSAAVFQHEDVVDLSSSSMFSVKSSNVAIGGSNMQYGTLHANLGPAEIGSRGEGCMDMYQKGIAMATLPMAHSNWGDSGIADNSQHTDDTSTDIDTDDKNQCNRAQHGAVIVVDSKDQTKVKYEDHKTLRRLVQNREAARKSRLRKKAYVQQLENSRVKLAQLEQEFHRARQQSIFIANPGDHCHSAVGNGALAFDMEYARWVEEHQRLLNDLKSAINSQIGDSDLHLLVDSVMAHYNELVRLKSVGEKADVFHMHSGMWKTPAERLFMWLGGFRSSELLKVVKNHLEPLTEQQLAGIDNLQHSSQQTEDALSQGKEALQQSLIETLSCTSLGSTGTGNVADYMGQMAIAMDKLATLENFLHQADLLKQGTLQQLQRILTTRQAARALIVINDHTSKLRALSSLWLARPRE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0696 454 Pfam Seed dormancy control 253 327 IPR025422 GO:0006351|GO:0043565
Lal6g0696 454 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 173 188 IPR004827 GO:0003700|GO:0006355
Lal6g0696 454 SUPERFAMILY Leucine zipper domain 170 207 IPR046347 GO:0003700|GO:0006355
Lal6g0696 454 Gene3D - 169 219 - -
Lal6g0696 454 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 41 454 - -
Lal6g0696 454 Pfam bZIP transcription factor 169 208 IPR004827 GO:0003700|GO:0006355
Lal6g0696 454 MobiDBLite consensus disorder prediction 119 143 - -
Lal6g0696 454 PANTHER TRANSCRIPTION FACTOR TGA9 41 454 - -
Lal6g0696 454 Coils Coil 189 216 - -
Lal6g0696 454 ProSiteProfiles DOG1 domain profile. 235 451 IPR025422 GO:0006351|GO:0043565
Lal6g0696 454 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 168 212 IPR004827 GO:0003700|GO:0006355
Lal6g0696 454 CDD bZIP_HBP1b-like 170 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0696 Lal-Chr6 4576323 4580401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0696 6 454 bZIP Transcription Factor Family AT1G68640 54.915 1.05e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal6g0696 DOG1 1.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0696 6 4576323 4580401 Lal6g0696 6 4576323 4580401 ECH
Lal22g0625 22 4386786 4390462 Lal6g0696 6 4576323 4580401 LSH