Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0689 ATGAAGGTTTCCGTGAAGACTCTGAAAGGAACGCTCTTCGAAATTGAAGTGAATCCCTCAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCTGATGTCTATCCTGCTGCACAACAAATGCTTATTCACCAAGGAAAAGTTCTCAAGGACGATACTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTATCGAAGACTAAGAGCTCAACTGGTGAAGGATCTACTACAACTGCTGCTTCAATTAAGTCATTGCAATCTCCGCAGACAAGTGCAGCTGCTACTCCAACCTCAGTGTTAACAGTGCCTCAAGCTTCTGCTATGTCTGGGGCAATGCCAGGGTCTGATGTATATGGGCTTGCAGTATCCAATCTTGTTGCTGGCAGCAACTTGGAGGGAACAATTCAGCAAATTGTTGATATGGGTGGAGGGAGCTGGAATAGGGATAATGTTGCCCGTGCTCTTCGTGCTGCTTACAACAACCCCGAGAGGGCCGTTGAATATTTGTATTCTGGCATACCGGAGCAAGCTGAAGCTCCACCTGTGGCCCAAGTGCCTGGAAGCACACAACCTGCAAATCCTCCAGCTGCTGCTCCTCTAGCAGCACAACCCGCGCCTGTTACTTCTGGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCTCAGGGCCTTCCTAACATTCGTGCTGCTGGTCCTGGCTCTGTAGATTTTCTGCGCAACAGTCAACAGTTCCTAGCCTTGCGATCTATGTTGCGGGCTAATCCACAGTTATTGCAGTCTATGCTACAAGAGCTGGGCAAACAAAATCCTGAAGTTCTGAGATCGATTCAAGCGCATCAAGAAGACTTCCTTCGCCTGGTAAATCAACCTCTGGAGGGCGATGGCGATGAGAATATATTGGGACAGCTGGAAGGTGCCATGCCACAATCTGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGTCTTGAAGCAATGGGTTTCAATCGTGCAATCGTATTGGAGGTGTTCTTCGCGTGTAACAAAAATGAGGAACTGGCAGCCAACTACCTTTTAGATCACATTCATGAGTTTGATGAATAA 1116 0.4668 MKVSVKTLKGTLFEIEVNPSDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDDTTLEENKVAENSFIVIMLSKTKSSTGEGSTTTAASIKSLQSPQTSAAATPTSVLTVPQASAMSGAMPGSDVYGLAVSNLVAGSNLEGTIQQIVDMGGGSWNRDNVARALRAAYNNPERAVEYLYSGIPEQAEAPPVAQVPGSTQPANPPAAAPLAAQPAPVTSGGPNANPLDLFPQGLPNIRAAGPGSVDFLRNSQQFLALRSMLRANPQLLQSMLQELGKQNPEVLRSIQAHQEDFLRLVNQPLEGDGDENILGQLEGAMPQSVTVTPEERQAIERLEAMGFNRAIVLEVFFACNKNEELAANYLLDHIHEFDE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0689 371 SMART uba_6 327 364 IPR015940 -
Lal6g0689 371 SMART uba_6 141 181 IPR015940 -
Lal6g0689 371 SMART CBM 241 286 IPR006636 -
Lal6g0689 371 Gene3D - 1 80 - -
Lal6g0689 371 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lal6g0689 371 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lal6g0689 371 SUPERFAMILY UBA-like 138 189 IPR009060 GO:0005515
Lal6g0689 371 SMART ubq_7 1 75 IPR000626 GO:0005515
Lal6g0689 371 MobiDBLite consensus disorder prediction 190 216 - -
Lal6g0689 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 139 182 IPR015940 -
Lal6g0689 371 Pfam UBA/TS-N domain 327 362 IPR015940 -
Lal6g0689 371 Pfam UBA/TS-N domain 144 179 IPR015940 -
Lal6g0689 371 SUPERFAMILY UBA-like 309 370 IPR009060 GO:0005515
Lal6g0689 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 119 370 - -
Lal6g0689 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 125 - -
Lal6g0689 371 SUPERFAMILY XPC-binding domain 243 307 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal6g0689 371 PRINTS DNA repair protein Rad23 signature 271 293 IPR004806 GO:0006289
Lal6g0689 371 PRINTS DNA repair protein Rad23 signature 321 337 IPR004806 GO:0006289
Lal6g0689 371 PRINTS DNA repair protein Rad23 signature 338 352 IPR004806 GO:0006289
Lal6g0689 371 PRINTS DNA repair protein Rad23 signature 353 368 IPR004806 GO:0006289
Lal6g0689 371 TIGRFAM rad23: UV excision repair protein Rad23 1 369 IPR004806 GO:0006289
Lal6g0689 371 Gene3D - 237 300 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal6g0689 371 Pfam XPC-binding domain 246 300 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lal6g0689 371 Gene3D - 319 366 - -
Lal6g0689 371 CDD Ubl_Rad23 1 74 - -
Lal6g0689 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 324 365 IPR015940 -
Lal6g0689 371 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lal6g0689 371 MobiDBLite consensus disorder prediction 79 106 - -
Lal6g0689 371 Gene3D - 134 184 - -
Lal6g0689 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23 119 370 - -
Lal6g0689 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0689 Lal-Chr6 4527891 4534936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0689 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 1.06e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0689 6 4527891 4534936 Lal6g0689 6 4527891 4534936 ECH