Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0680 ATGGGTAACTGGGAAAGAAGGGCTCTCATAGAAGTTGCTTTATATGGCTGCATTTTATTGGCAGGGTGCAGCAGGAAAAAGAAAAGCAGCTCGAAGGATGGAAAAGATGATTGTGGAAAATTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAATCTCAAGCACTTGGGGGACACATGAACCGCCACCGCCAAGAAAGGGAAACAGAGACACTGAACCATGCTCGTCAGCTGGTCTTTCGTAACGATCATAACCTAACTACCCGAGTTGCACCTCTCCTAGTATGCTGTCAAACAGTACCAACAGGGAGCTATCTTCCAACAAGTAACATGGGAAACCCAACAAAGCCTCTGAAATTACCAAAATACTTCTCTAGTTCATCCTCAATCAACATTTCACCACCACCACCACCTCCACAACAACCATTCTTATCCGGCGCCTCACCACCGCGGCCTCTCTCATTCCCCTCACACTACTCTCACCATTCTGTGAATGATTGCTATGTGGGACATGTCACGATCAGTAGCAGAAGCAGACAGAAATATGGACACGACCACAACCTCGACTCTAGCTACACGTGCATTGGTGCACCAGTTGGACAAGCAATCACAGGTGGTGGTAAGGACAGGTCACTGCTAAATCAGGAGGAAAGGATGAATTGGGGAAGGAGCTATTCAAGGATGGGAATCACCTGTCCCGAACGGCGGCTCATTTCTTGTCCCGGACCAATGATATATTATCATATAAATAAAAGAAATTTTTAA 768 0.4596 MGNWERRALIEVALYGCILLAGCSRKKKSSSKDGKDDCGKFYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNLTTRVAPLLVCCQTVPTGSYLPTSNMGNPTKPLKLPKYFSSSSSINISPPPPPPQQPFLSGASPPRPLSFPSHYSHHSVNDCYVGHVTISSRSRQKYGHDHNLDSSYTCIGAPVGQAITGGGKDRSLLNQEERMNWGRSYSRMGITCPERRLISCPGPMIYYHINKRNF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0680 255 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Lal6g0680 255 MobiDBLite consensus disorder prediction 132 147 - -
Lal6g0680 255 MobiDBLite consensus disorder prediction 127 156 - -
Lal6g0680 255 PANTHER ZINC FINGER PROTEIN JAGGED 25 205 IPR045320 GO:0003700
Lal6g0680 255 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Lal6g0680 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Lal6g0680 255 PANTHER ZINC FINGER PROTEIN JAGGED 25 205 IPR031113 GO:0007275
Lal6g0680 255 SUPERFAMILY beta-beta-alpha zinc fingers 40 70 IPR036236 -
Lal6g0680 255 Gene3D Classic Zinc Finger 23 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0680 Lal-Chr6 4467393 4468666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0680 27 203 C2H2 Transcription Factor Family AT1G13400 41.573 1.13e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal6g0680 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0680 6 4467393 4468666 Lal6g0680 6 4467393 4468666 ECH