Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0677 ATGCCCTTATCAAGTGACAACTTTTTGAATGAACAGCCTAAGCTCCATACTTTGCAGACCTTTACTCAATCTGAAAATCAACCAAATCATGTGCCACTGATTCATTCATCACCCTTCAGATATGATTATGAAGAACCAGAGACTATGGTTGTATCAGAAAGCTTAGGGGATTCTTCTCCTTCATATACTGCAACTGGTTGTGCTGAAAAGAAAAAGAATCTTGTTGGAAACAAAAGGAAGAGAAACAATAATGAAGTCATTCATGTAAGAGCAAAACGAGGCCAAGCAGCTGATAGCCACAGTTTAGCAGAAAGGGTGAGAAGAGAGAAAATCAATGAGAAACTGAGACACTTGCAGGACCTGGTTCCAGGGTGCTATAAGACAATGGGAATGGCAGTTATGTTAGATGTGATAATAAATTATATTCATTCACTACAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCAGCAGCAAGCATGTATTTTGATTTCAACACTTCGGAGATGGGTGCCACAAGAACCATGCAGCAGAGAAGTGCTAGCACACATGAAATCCAAGAGATGGAAATGTTAGCAGGAGAAGGTTATGGTGGATTCTGCTATTTCAACCCAACATGGCCACTTTATTGA 633 0.3981 MPLSSDNFLNEQPKLHTLQTFTQSENQPNHVPLIHSSPFRYDYEEPETMVVSESLGDSSPSYTATGCAEKKKNLVGNKRKRNNNEVIHVRAKRGQAADSHSLAERVRREKINEKLRHLQDLVPGCYKTMGMAVMLDVIINYIHSLQQQIEFLSMKLSAASMYFDFNTSEMGATRTMQQRSASTHEIQEMEMLAGEGYGGFCYFNPTWPLY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0677 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 164 IPR036638 GO:0046983
Lal6g0677 210 Gene3D - 90 154 IPR036638 GO:0046983
Lal6g0677 210 PANTHER TRANSCRIPTION FACTOR BHLH75 55 195 - -
Lal6g0677 210 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Lal6g0677 210 SMART finulus 101 151 IPR011598 GO:0046983
Lal6g0677 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Lal6g0677 210 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 55 195 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0677 Lal-Chr6 4446989 4448438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0677 85 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 65.789 6.77e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0677 HLH 1.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0677 6 4446989 4448438 Lal6g0677 6 4446989 4448438 ECH
Lal6g0677 6 4446989 4448438 Lal16g1011 16 6723723 6725452 ECH
Lal6g0677 6 4446989 4448438 Lal8g0432 8 2908368 2910411 ECH
Lal6g0677 6 4446989 4448438 Lal10g0976 10 17037992 17039843 ECH
Lal6g0677 6 4446989 4448438 Lal6g1644 6 19205330 19207783 ECH