Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1766 ATGGAAAGGACTTCACCGGAACCATCTACTGCCGGAAATTCCAATCTCCGGCGAGCCATCGACTTCATTTCTTCCCTCATTTCCATTTCTCATCCCATCAGAGTCTTCGCCGGAAAATGGCAACTCATTCGTGCCAACCTCGAACAGCTTCATTCTTCACTAATCGCCTCCGAGAATCCCGATTCCGCCGAGAATCCCTCACTTTCCGGCACCCTCCGTTCGTTACTAAGCACCGCCGATGAGTGTCATGACCTCGCTCGCCGCTGCGCTGACGTGTCATACAGCGGGAAGTTACTGATGCAGAGTGATTTGGATGTAACGTTAGTGAAGCTGAACCACCACGTGAAGAAGCTCGATGAGTTGTACAATACGGGTATTTTGATACGTAGCCACGCTCTTGTTGTATCAAAACCTTGTCTTGGTGCTTCAAAAGAGGATATGAGGTTTTACATAAGGGACCTTTTGACAAGGATGAAAATCGGTGATGTGGGTATGAAGAAGATGGCTTTGATTAATCTTCATGAGGTTGTTGTTGAAGATGATAAGTACGTGAAGGTTATTGTGGAAGTTGGTGATGTTGTTCATGTGTTGGTTGAATTTATTGGTTCTTCTGAGGTTGTGGTTCAAGAAGAATCTGTAAAGGTGGTTGCTTTGATTGCTGGGTTTGGTGATTCTTCATATAAAGGGGTTTTGATTGGTGCTGGGGTTGTTGGTAATTTGATTAAGGTTTTGGAACGTGGAAGTGAGGTTGGGAAAATTGGCTCTGCTAGGTGTTTGATGAAATTGACTGAAAATTCGGATAATGCTTGGTTGGTTTCGGCCCATGGGGGTGTGAATGTTTTGTTGAAAATTTGTGGTAATGTTGATTCAAAAGGGGATTTGGTTGGTCTTGCTTGTGGGGTTTTGAGGAATCTTGTTGGTGTTGAAGAGATCAAGAGGTTTATGGTTGAAGAAGGAGTGGTTTCGACCTTTATCAGGCTTGTTAGATCTAAGGATGAAGCAATTCAGGTCAGTTCCATTGAGTTCATTCAGAATATTGCCTTTAAAGATGAATTGGTTAGGCAAATGGTGGTTAGAGAGGGTGGTATTCGTGTTTTGTTACTTGTTTTGGATCCTAAATTCTCTTGTTCATCTAAAACTAAGGAGGTAGTAATGAGGGCTATTGAAAACTTGTGTTTTTCTTCATCTACTTGTGTAAGTACTTTGATGAGTTATGGATTTGTAGATCAATTGTTGTACTATATTCGAAACGGCGAGGTTTCGATTCAAGAGTTGGCATTGAAAGTGGCATTTAGATTGTGTGGAACATCAGAGGAGGCTAAGAAAGCACTAGGTGATGCTGGCTTCATGCCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTCGAGGTTCGCGAAATGGCCGCCGAGGCACTTTCTGGCATGGTTACAGTGCCTAAAAATAGAAAGAAGTTTGTGCAGGATGACCAAAACATTGCCCTTATTCTTCAGTTGATTGACCCTGGAGAGGGAAATTCAAGTAGCAAAAAGTTCTTAATCTCTATCTTAATGTCATTAACGAATTGCAATACTGGGAGGAAAAAGATTGTGAGTTCTAGTTATGCCAAGAATATAGAGAGGCTTTCAGAAAATGAAGTTTGTTCTGATGCCAAGAGACTTGTAAGGAAGCTAGCCACAAACCGTTTCCGCAGTATGTTGAGTGGAATCTGGCATTCTTAA 1719 0.42 MERTSPEPSTAGNSNLRRAIDFISSLISISHPIRVFAGKWQLIRANLEQLHSSLIASENPDSAENPSLSGTLRSLLSTADECHDLARRCADVSYSGKLLMQSDLDVTLVKLNHHVKKLDELYNTGILIRSHALVVSKPCLGASKEDMRFYIRDLLTRMKIGDVGMKKMALINLHEVVVEDDKYVKVIVEVGDVVHVLVEFIGSSEVVVQEESVKVVALIAGFGDSSYKGVLIGAGVVGNLIKVLERGSEVGKIGSARCLMKLTENSDNAWLVSAHGGVNVLLKICGNVDSKGDLVGLACGVLRNLVGVEEIKRFMVEEGVVSTFIRLVRSKDEAIQVSSIEFIQNIAFKDELVRQMVVREGGIRVLLLVLDPKFSCSSKTKEVVMRAIENLCFSSSTCVSTLMSYGFVDQLLYYIRNGEVSIQELALKVAFRLCGTSEEAKKALGDAGFMPELVKFLNAKSFEVREMAAEALSGMVTVPKNRKKFVQDDQNIALILQLIDPGEGNSSSKKFLISILMSLTNCNTGRKKIVSSSYAKNIERLSENEVCSDAKRLVRKLATNRFRSMLSGIWHS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1766 572 SMART arm_5 180 221 IPR000225 GO:0005515
Lal5g1766 572 SMART arm_5 350 393 IPR000225 GO:0005515
Lal5g1766 572 SMART arm_5 265 307 IPR000225 GO:0005515
Lal5g1766 572 SMART arm_5 437 477 IPR000225 GO:0005515
Lal5g1766 572 SMART arm_5 308 348 IPR000225 GO:0005515
Lal5g1766 572 Gene3D - 150 561 IPR011989 -
Lal5g1766 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 276 320 IPR000225 GO:0005515
Lal5g1766 572 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 572 - -
Lal5g1766 572 SUPERFAMILY ARM repeat 152 556 IPR016024 -
Lal5g1766 572 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 572 - -
Lal5g1766 572 Pfam Armadillo/beta-catenin-like repeat 438 473 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1766 Lal-Chr5 19683364 19685082 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1766 - - gmx:100783537 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1766 5 19683364 19685082 Lal11g0143 11 940970 942862 LSH
Lal15g0587 15 4065029 4066768 Lal5g1766 5 19683364 19685082 PCT
Lal23g0978 23 11771725 11773467 Lal5g1766 5 19683364 19685082 PCT
Lal5g1766 5 19683364 19685082 Lal15g0587 15 4065029 4066768 PCT
Lal5g1766 5 19683364 19685082 Lal23g0978 23 11771725 11773467 PCT