Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1750 GTTCAACTTAATTTGACTCAGGTTTCTAATAGAGGGGTTGATTGGGACCCAACCTTATTGGAAGCACAAAATTTGGAGCTACCACAACTTCATGATTCAATGAGGAAACAACAGCACCAAAATCAGCAAGTACCAGAGCTTGTGAAATGCCCAAGATGTGATTCAACAAATACCAAGTTTTGCTACTACAACAATTATAACAAGTCTCAGCCGCGTCATTTCTGTAGAGCTTGTAAGAGGCACTGGACTAAAGGTGGAACTCTAAGAAATGTTCCTGTTGGTGGTGGCAGAAAGAATAAGAGAGTAAAAAAACCAACCACACCACCCTCAACAACAACCACTACTTCTATTACCATAACAAGTGTTCCTTCTCTTGAAGTGGATCATGATCACACAAAAATACCTTCTTCTCATTACCAGTCTTTGATTTGTCCTCAACCATCTCTTGATAATCTCATTAGTACTACAACAGATTCAAAAGATAAAGACTTTGGTATAGGTGATGGAATCTTTCTGAGTTCAAGTATGCCTCATACTCAAAACCAAAGCATGATCTTCCCTTTCTCAACAACCTCAAGCTCTTTTGACACAAACCCATGTTTTGTATCAACCTCTTTGCCATCCTCGAATGTGTATAACTATGGAGAAGAATTTAAAACAATGGAGGAGTCAACCATCAACAGCATGATGCTTATCAGTAGTGGCAATAACACACCACAATGGGAGATGCCTGCAACAGGTATTGGCATGGGAATCTCAAACAATTGGAGTTGGGAGGATATTGATTCATTTGTCTTAACTGATGTTAATGTTCCTTGGGATGATGATTCTGATGTCAAACCCTCAGAAAATAAAATGAAAAAAATGTAA 870 0.3851 VQLNLTQVSNRGVDWDPTLLEAQNLELPQLHDSMRKQQHQNQQVPELVKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPTTPPSTTTTTSITITSVPSLEVDHDHTKIPSSHYQSLICPQPSLDNLISTTTDSKDKDFGIGDGIFLSSSMPHTQNQSMIFPFSTTSSSFDTNPCFVSTSLPSSNVYNYGEEFKTMEESTINSMMLISSGNNTPQWEMPATGIGMGISNNWSWEDIDSFVLTDVNVPWDDDSDVKPSENKMKKM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1750 289 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Lal5g1750 289 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Lal5g1750 289 Pfam Dof domain, zinc finger 47 100 IPR003851 GO:0003677|GO:0006355
Lal5g1750 289 MobiDBLite consensus disorder prediction 91 116 - -
Lal5g1750 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 220 IPR045174 GO:0003700|GO:0006355
Lal5g1750 289 PANTHER OS06G0284500 PROTEIN 36 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1750 Lal-Chr5 19528627 19531253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1750 48 105 C2C2-Dof Transcription Factor Family AT1G28310 83.051 6.62e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal5g1750 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1750 - - gmx:778119 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1750 5 19528627 19531253 Lal3g0078 3 469391 470221 LSH
Lal15g0600 15 4170051 4170907 Lal5g1750 5 19528627 19531253 PCT
Lal23g0957 23 11639825 11640679 Lal5g1750 5 19528627 19531253 PCT
Lal5g1750 5 19528627 19531253 Lal15g0600 15 4170051 4170907 PCT
Lal5g1750 5 19528627 19531253 Lal23g0957 23 11639825 11640679 PCT