Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1724 ATGGATCCAGTTGGTGGAGAAAAAGATATGAATGATCAACAATCTCTTGATCAGAGAGCAAATGAGATGCAAGAAGGTGGTGATAGGAAACAGACCAAGATTCAACAACCTCAACGTCCACAACAACCTCAACAATGTCCACGTTGTAATTCTATGAACACCAAGTTCTGCTATTACAACAACTACAATGTGGCACAACCTCGTCATTATTGCAAAACTTGCAGAAGGTATTGGACCCAAGGTGGAACCTTGAGGAACATACCTATTGGTGGTGGCTGTAGAAAGAAGAAGCATGTTGAAAATTCTTCATCTTCTCGATCTGAACAGCTACAACAATCACGACTACAAGACATGGTTGTTCAAACCCAACAGCCAAACATGACAACATTGGTTGGAAAGTCCACAAACCCTCTTCTTGGAATGTCTCCTTCCACCAATCCCTTCTATCAAGGTGGTGCTGCTGCTGCTGGTGGTGGGTACTTGTCTTCTCTGCACACGATTCATTCAATGAATCAATCACGATCAAGATTTTATGATCAGTCTTTGAAAATTGGAAATGATATAGCTGGTTCTTCTTCCAATTTGGATCTAGCATCATGTTTCAATATTGGTTCTCTTTCCAACCAATGCCAAATTCGACCATCCCCATTGTACCAAATTGGTGGCATAGAAAGAGAGCTACAATCTCAGTATACACCACAACAAAGTTCAATGATTCCATCAACTATGAACAGTATCCATACTAGTGTTCCTACTCAAACTGATTGGCCTAATAGCTTCATTAATAATGCTAATAATAGAACTTGTGATGCATCTTTATGGAGTACTATTAGCAATAGCACTGCTTCCATTTGTGGTAACATTGAGAGTAGTGTTAATGGTGTTGATTCTACTCCTTTAACCCTAAATCAGTGGTCTGATTTTGCAGGGTTTGGCCCTCCCCCCTCATCTTATTGA 957 0.4023 MDPVGGEKDMNDQQSLDQRANEMQEGGDRKQTKIQQPQRPQQPQQCPRCNSMNTKFCYYNNYNVAQPRHYCKTCRRYWTQGGTLRNIPIGGGCRKKKHVENSSSSRSEQLQQSRLQDMVVQTQQPNMTTLVGKSTNPLLGMSPSTNPFYQGGAAAAGGGYLSSLHTIHSMNQSRSRFYDQSLKIGNDIAGSSSNLDLASCFNIGSLSNQCQIRPSPLYQIGGIERELQSQYTPQQSSMIPSTMNSIHTSVPTQTDWPNSFINNANNRTCDASLWSTISNSTASICGNIESSVNGVDSTPLTLNQWSDFAGFGPPPSSY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1724 318 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Lal5g1724 318 MobiDBLite consensus disorder prediction 1 47 - -
Lal5g1724 318 MobiDBLite consensus disorder prediction 1 15 - -
Lal5g1724 318 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Lal5g1724 318 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 13 314 - -
Lal5g1724 318 MobiDBLite consensus disorder prediction 30 47 - -
Lal5g1724 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 314 IPR045174 GO:0003700|GO:0006355
Lal5g1724 318 MobiDBLite consensus disorder prediction 90 114 - -
Lal5g1724 318 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1724 Lal-Chr5 19357738 19358694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1724 2 107 C2C2-Dof Transcription Factor Family AT5G60200 50.000 1.01e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal5g1724 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1724 - - lang:109329186 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1724 5 19357738 19358694 Lal5g1724 5 19357738 19358694 ECH
Lal5g1724 5 19357738 19358694 Lal11g0196 11 1390331 1391209 LSH
Lal16g0680 16 4396717 4397679 Lal5g1724 5 19357738 19358694 PCT
Lal23g0940 23 11508257 11509069 Lal5g1724 5 19357738 19358694 PCT
Lal5g1724 5 19357738 19358694 Lal16g0680 16 4396717 4397679 PCT
Lal5g1724 5 19357738 19358694 Lal23g0940 23 11508257 11509069 PCT