Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0049 ATGGAAGGGATAGATCCAAATTCATGCACAAAGCCAATGGAGAAAAAGTTAAGACCACAAGAGCAATTGAATTGTCAAAGGTGTAATTCAACAAACACAAAGTTTTGTTACTACAACAACTATAGCCTCACACAACCAAGATATTTTTGCAAGACTTGTAGAAGGTATTGGACTTTAGGTGGTTCTATAAGAAATGTTCCAATCGGCGGTAGTTCAAGGAAGAACAAAAAAGTTATAACCTCGGCATCGTCATCATCGTCGTCGTCGAAGGTTCCTGGCTTAAACCCTATTTCTTTCCGAAACCCTAAAATAATGGAAGGAGGCCATGATCTTAGTTTGGCATTTCCATCCATGAAGAATTATCATCATGAAATGTCCTCAAATATTGGGATACCTAAACTTGAAGTTGGTAATATTAGTTATCATGGCATGGTTTCTAGTGGTTTGAGTAATCCTTATGTGTCTAATTCTTTGATGCTAAACCCTAATTCTCTTTACCCAAGTAGTAATAGCTTTCACATGCAAGAAATTAAACCAAACATTGGATTTTCAATTGATGGGTTTGAAAATAGATCGTATACAAATGGAGACATGAAGAAGCATTTAAATTCAAGTGTTCAAGTGGAACACAATAAAGAACAAGGAAATTCAAGTAGTGGATATTGGAATGAAATGATTGATGAAGGAAAGAAATAA 696 0.352 MEGIDPNSCTKPMEKKLRPQEQLNCQRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTLGGSIRNVPIGGSSRKNKKVITSASSSSSSSKVPGLNPISFRNPKIMEGGHDLSLAFPSMKNYHHEMSSNIGIPKLEVGNISYHGMVSSGLSNPYVSNSLMLNPNSLYPSSNSFHMQEIKPNIGFSIDGFENRSYTNGDMKKHLNSSVQVEHNKEQGNSSSGYWNEMIDEGKK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0049 231 MobiDBLite consensus disorder prediction 207 223 - -
Lal5g0049 231 Pfam Dof domain, zinc finger 21 77 IPR003851 GO:0003677|GO:0006355
Lal5g0049 231 ProSiteProfiles Zinc finger Dof-type profile. 23 77 IPR003851 GO:0003677|GO:0006355
Lal5g0049 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 226 IPR045174 GO:0003700|GO:0006355
Lal5g0049 231 ProSitePatterns Zinc finger Dof-type signature. 25 61 IPR003851 GO:0003677|GO:0006355
Lal5g0049 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 10 226 - -
Lal5g0049 231 MobiDBLite consensus disorder prediction 207 231 - -
Lal5g0049 231 MobiDBLite consensus disorder prediction 70 93 - -
Lal5g0049 231 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0049 Lal-Chr5 538478 539173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0049 15 219 C2C2-Dof Transcription Factor Family AT3G61850 42.982 2.39e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal5g0049 zf-Dof 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0049 - - pvu:PHAVU_006G114900g 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0049 5 538478 539173 Lal17g0583 17 4163760 4166730 ECH
Lal5g0049 5 538478 539173 Lal4g0508 4 3683890 3685172 ECH
Lal5g0049 5 538478 539173 Lal21g0577 21 4294142 4296451 ECH
Lal5g0049 5 538478 539173 Lal5g0049 5 538478 539173 ECH
Lal5g0049 5 538478 539173 Lal18g1044 18 13449850 13451997 ECH