Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0047 ATGGAACACCATTTCATATTATTTCTCTCTCTATTCTCCTTCTTCACTCTTTTCTTCTCTCTTTCTTCTTCAACCCAAACACAAACCCTAGTTCTTCACTCTCTCACTCTCCCACATGCACCAACAACACTCTCATGGCCCGAATCAGAAAAACCCGACCCGGATCATGAAGATTCTTCATCATCTTCATCTTCTCTCTCTATTTCTCTTCACCACATTGATTCTCTCTCTTCATCAAACTCAACACCACAACAACTCTTCAACCTCAGGCTCAAACGCGATTCATATAGAGTTGAATCTATATCGGGTCGGGTCAATAAGACAACCGGGTCGGGTTTTAGTAGTTCAATAATATCGGGTTTAGAACAAGGGAGTGGAGAATATTTCACGCGCTTAGGAGTTGGAACACCTGCTAGGTATGTGTATATGGTGATTGATACAGGAAGCGACGTCGTTTGGTTACAATGTGCTCCTTGTAAGAAATGTTACTCACAAACGGGTCGGGTATTTGACCCGACTAAGTCAAGATCATATGCTGGGGTACCATGTGGTGCACCACTTTGTAAGAGATTGGATACTCCTGGATGTAATAATAACAACAAGATTTGCCAGTATCAGGTTTCCTATGGTGATGGTTCTTTCACATTTGGTGATTTCAGCACTGAAACGCTGACGTTTAGGAAAAAAAGGGTGGCACGTGTGGCACTAGGTTGTGGCCATGATAATGAAGGTCTCTTTATTGGTGCAGCCGGTTTATTAGGTCTTGGTCGTGGAAGGTTATCTTTTCCGGTTCAAACCGGACATCGGTTCAATAACAAATTCTCTTATTGCCTAGTTGACCGGTCTGCTTCTGCCAAACCGTCTTCCGTTATTTTTGGAGACTCGGCTGTTTCCCGAACCGCCCGGTTCACTCCTTTGCTCAAAAACCCGAAGCTCGACACCTTTTACTATGTCGAGCTTCTTGGCATTAGTGTTGGTGGCACCTCGGTTCGTGGTTTATCCGGTTCACTCTTTCGGCTTGACCAAGCCGGTAATGGAGGGGTTATAATTGACTCGGGTACATCCGTGACTAGGTTGACCCAACCCGCTTATATTGCTCTAAGGGATGCATTCCGGGTCGGGGCCAAACATTTAAAACGGGCACCCGAGTTTTCGCTATTTGACACATGCTACGACTTATCCGGGCTAACAGAGGTGAAGGTTCCGACGGTGGTGCTACATTTTCGCGGTGCTGATGTGTCACTTCCCGCAACTAATTACCTTATTCCGGTGGATAGCAGTGGCAGCTTCTGCTTCGCCTTCGCCGGAACCATGAATGGGTTGTCCATAATTGGGAACATCCAGCAGCAAGGGTTTCGGGTCGTGTATGATTTGGCGGGTTCACGGGTCGGGTTTGCACCAAGAGGTTGTGTGTGA 1416 0.464 MEHHFILFLSLFSFFTLFFSLSSSTQTQTLVLHSLTLPHAPTTLSWPESEKPDPDHEDSSSSSSSLSISLHHIDSLSSSNSTPQQLFNLRLKRDSYRVESISGRVNKTTGSGFSSSIISGLEQGSGEYFTRLGVGTPARYVYMVIDTGSDVVWLQCAPCKKCYSQTGRVFDPTKSRSYAGVPCGAPLCKRLDTPGCNNNNKICQYQVSYGDGSFTFGDFSTETLTFRKKRVARVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGHRFNNKFSYCLVDRSASAKPSSVIFGDSAVSRTARFTPLLKNPKLDTFYYVELLGISVGGTSVRGLSGSLFRLDQAGNGGVIIDSGTSVTRLTQPAYIALRDAFRVGAKHLKRAPEFSLFDTCYDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGSFCFAFAGTMNGLSIIGNIQQQGFRVVYDLAGSRVGFAPRGCV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0047 471 Gene3D Acid Proteases 111 291 IPR021109 -
Lal5g0047 471 CDD cnd41_like 127 470 IPR033873 -
Lal5g0047 471 SUPERFAMILY Acid proteases 123 470 IPR021109 -
Lal5g0047 471 PANTHER ASPARTYL PROTEASES 16 470 IPR001461 GO:0004190|GO:0006508
Lal5g0047 471 Pfam Xylanase inhibitor C-terminal 316 466 IPR032799 -
Lal5g0047 471 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 143 154 IPR001969 GO:0004190|GO:0006508
Lal5g0047 471 Pfam Xylanase inhibitor N-terminal 128 294 IPR032861 -
Lal5g0047 471 ProSiteProfiles Peptidase family A1 domain profile. 128 466 IPR033121 -
Lal5g0047 471 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 348 359 IPR001969 GO:0004190|GO:0006508
Lal5g0047 471 Gene3D Acid Proteases 292 471 IPR021109 -
Lal5g0047 471 MobiDBLite consensus disorder prediction 43 65 - -
Lal5g0047 471 PRINTS Pepsin (A1) aspartic protease family signature 134 154 IPR001461 GO:0004190|GO:0006508
Lal5g0047 471 PRINTS Pepsin (A1) aspartic protease family signature 348 359 IPR001461 GO:0004190|GO:0006508
Lal5g0047 471 PRINTS Pepsin (A1) aspartic protease family signature 442 457 IPR001461 GO:0004190|GO:0006508
Lal5g0047 471 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 16 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0047 Lal-Chr5 526219 528516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0047 126 470 Miscellaneous Gene Families AT1G77480 28.382 4.10e-29 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0047 5 526219 528516 Lal5g0047 5 526219 528516 ECH
Lal5g0047 5 526219 528516 Lal18g1038 18 13362256 13363671 PCT
Lal18g1038 18 13362256 13363671 Lal5g0047 5 526219 528516 PCT