Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0680 ATGTCAGCTATAGTTTCAGCCCTTACCAAAGTCATTGGTGGCACCAATAGTGAACCACTTCACCAACATCAAGACCCTTTAACAGCCATAACACAGAGTCAACAATCTCAACCAACACAAGAGGATCAAGGGAACACAAGAAGAAGACACTATAGAGGGGTGAGACAACGACCATGGGGGAAATGGGCAGCAGAAATTCGAGATCCAAATAAAGCAACAAGGGTATGGCTTGGAACATTTGATAATGCTGAATCTGCTGCACTTGCATATGATGAAGCTGCTCTCAGATTCAAAGGAACCAAAGCAAAACTCAATTTCCCTGAAAGGGTTCAAGCCACTGGTCAATTTGGTACTTACCTTACAAATCGTCAAAATCAACATGCACCAATTAACCATGTTCCTCAACAAACATATTCATATAATGCACAAGTTATGGGAAGTGGAGAGAGTAGTGATAACAATTTCAGTTATGATATGACTAGTTTCTATGGGAATCAGCCTTTTATATCTTCATCTTCTGGACTAACTCAGCAGCAGCAACAAGAGCTTCTTAGGTTTTCTATGCAATATGGTGGTTCTTCTTCTGCTTCTGATCAACCTCCTAGGAATTGGATGGATGACAAGGATAGAAGACATTGA 639 0.4069 MSAIVSALTKVIGGTNSEPLHQHQDPLTAITQSQQSQPTQEDQGNTRRRHYRGVRQRPWGKWAAEIRDPNKATRVWLGTFDNAESAALAYDEAALRFKGTKAKLNFPERVQATGQFGTYLTNRQNQHAPINHVPQQTYSYNAQVMGSGESSDNNFSYDMTSFYGNQPFISSSSGLTQQQQQELLRFSMQYGGSSSASDQPPRNWMDDKDRRH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0680 212 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Lal4g0680 212 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Lal4g0680 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF115-LIKE 1 203 - -
Lal4g0680 212 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Lal4g0680 212 PANTHER DNA-BINDING DOMAIN 1 203 IPR044808 GO:0003700|GO:0009873
Lal4g0680 212 MobiDBLite consensus disorder prediction 186 201 - -
Lal4g0680 212 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lal4g0680 212 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Lal4g0680 212 MobiDBLite consensus disorder prediction 186 212 - -
Lal4g0680 212 Gene3D AP2/ERF domain 49 110 IPR036955 GO:0003700|GO:0006355
Lal4g0680 212 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Lal4g0680 212 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Lal4g0680 212 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0680 Lal-Chr4 5321613 5323687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0680 1 129 AP2-EREBP Transcription Factor Family AT5G61890 58.451 1.34e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal4g0680 AP2 6.8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0680 4 5321613 5323687 Lal21g0694 21 5496544 5497748 ECH
Lal12g1301 12 15962022 15964578 Lal4g0680 4 5321613 5323687 ECH
Lal6g1644 6 19205330 19207783 Lal4g0680 4 5321613 5323687 ECH
Lal4g0680 4 5321613 5323687 Lal4g0680 4 5321613 5323687 ECH
Lal21g0694 21 5496544 5497748 Lal4g0680 4 5321613 5323687 LSH
Lal19g0997 19 13842021 13843395 Lal4g0680 4 5321613 5323687 PCT
Lal4g0680 4 5321613 5323687 Lal19g0997 19 13842021 13843395 PCT