Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0623 ATGGAGAAAGAAGGTGGTGTAGAAAGAAACATGAATAAGCAGCAACAACGACATCAACCTCTTCCATGTCCTCGTTGCATGTCTTTAAACACCAAGTTTTGCTATTACAACAACCATAGCTTAACACAACCTCGTTACTTCTGCAAAGATTGTAGAAGGAATTGGACCCATGGTGGAGCTTTGAGGAATATTCCTGCTGGTGGTAGGTCACGTAATAAGCAGAAGAATGCAGAAATTTCTTCATCTTCTCGGCCACAACAACCACCACCACCACCATCAAATGGGGTGGTTCTCCAAACTCAACATAAAGATTCTTCTTCCATGATGCAATCTTTTGTTGACCCCTTTTATCAAGGTGGTAATGGGTACTTATCTTCTGATTTTGGTCTTGCTTCTGGTTTAAATAACGTTGGTTCTTTTTCTTCTCAATATCAAACTCTACCATCACAATTCTACCAAATGGGTGGTATAGAAAAGGAGGTGCAATCACTGTATATGAGTAATAACAATAATTATAGTGTTGCTTCTCATAGTGATTATCCTCAGAACTACTTCATCAATAATACTAATAATAATGTGACTTATGATTCGTCTTCTCTGTGGAGCACTGTTATTAATAATAACAACACTTCCCTTAGTGGTAACACTGAGAGGAAAGCATTTGCTACAGATTCTTCTCCTATGAATCCAAATCAATTGCCTGATTTTCCATTCTATGGTCATCCCCCTTCATATTATGATTGA 744 0.379 MEKEGGVERNMNKQQQRHQPLPCPRCMSLNTKFCYYNNHSLTQPRYFCKDCRRNWTHGGALRNIPAGGRSRNKQKNAEISSSSRPQQPPPPPSNGVVLQTQHKDSSSMMQSFVDPFYQGGNGYLSSDFGLASGLNNVGSFSSQYQTLPSQFYQMGGIEKEVQSLYMSNNNNYSVASHSDYPQNYFINNTNNNVTYDSSSLWSTVINNNNTSLSGNTERKAFATDSSPMNPNQLPDFPFYGHPPSYYD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0623 247 MobiDBLite consensus disorder prediction 59 104 - -
Lal4g0623 247 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 198 IPR045174 GO:0003700|GO:0006355
Lal4g0623 247 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Lal4g0623 247 MobiDBLite consensus disorder prediction 69 83 - -
Lal4g0623 247 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 8 198 - -
Lal4g0623 247 MobiDBLite consensus disorder prediction 222 247 - -
Lal4g0623 247 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Lal4g0623 247 MobiDBLite consensus disorder prediction 1 22 - -
Lal4g0623 247 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0623 Lal-Chr4 4618874 4619617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0623 21 98 C2C2-Dof Transcription Factor Family AT5G60200 57.692 3.80e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal4g0623 zf-Dof 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0623 - - lang:109339533 393.66