Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0508 ATGGATACAGGTCAATGGGCACAGGGTATGGAAGATTCTTCAAAGGCACCACAACCTCCTATATTAGAAAGATCAAGGGCAAGACCCCAAAAGGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAATAAACACTAAATTCTGTTACTACAATAACTATAGCCTCTCACAACCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGTGGTTCTTTGAGAAATGTTCCTGTTGGTGGTGGTTCAAGAAAGAACAAAGGATCAATTTCTTCATCATCAACAACACCTACATCAAATAACAAGCTTCATGATTTATCAACACAACCAAACAATAATTTACCAGACTCAGTTTCTCATAACCCAAAGATCCATCAAGGCCAAGATCTTAACATAGCTTATCCACCATTATCTGAAGACTACAACACCATATCTAAATTTATTGAGGTACCTTTCAGCCCTGAAGATAAGGGTCACACTCATCACCTTCAGAATCCAAGTTCATCAGCTATTAAACCTCTCAAAACTGGGATCACAACTACTTCATTCATGCCCATGTCTTTGTCAGATTCAACTACAATGTATAACTCAGCTGGTTTCCCTCCTTTGCAAGAGTTTATTAAGCCTGGACTTGACTTTAGTCTTGAAGGGTTTGAAAATGGCTATGGTGGTGGTCTTCATGGAATTCAACAAGATGGTACAAGTGGTGCAAGGATCTTGTTTCCTCCTGAGAATTTGAAGCAACAACAGGTTCAAAACACTGACGAGTTTCATAACCAGAATAGGAATCAAGGGAATTCAACTGGGTATTGGAATGGAATGTTAGGTGGTGGATCATGGTAG 846 0.3948 MDTGQWAQGMEDSSKAPQPPILERSRARPQKDQALNCPRCNSINTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKGSISSSSTTPTSNNKLHDLSTQPNNNLPDSVSHNPKIHQGQDLNIAYPPLSEDYNTISKFIEVPFSPEDKGHTHHLQNPSSSAIKPLKTGITTTSFMPMSLSDSTTMYNSAGFPPLQEFIKPGLDFSLEGFENGYGGGLHGIQQDGTSGARILFPPENLKQQQVQNTDEFHNQNRNQGNSTGYWNGMLGGGSW 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0508 281 MobiDBLite consensus disorder prediction 1 35 - -
Lal4g0508 281 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Lal4g0508 281 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Lal4g0508 281 MobiDBLite consensus disorder prediction 76 125 - -
Lal4g0508 281 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 17 277 - -
Lal4g0508 281 MobiDBLite consensus disorder prediction 86 125 - -
Lal4g0508 281 MobiDBLite consensus disorder prediction 261 281 - -
Lal4g0508 281 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 277 IPR045174 GO:0003700|GO:0006355
Lal4g0508 281 MobiDBLite consensus disorder prediction 261 275 - -
Lal4g0508 281 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0508 Lal-Chr4 3683890 3685172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0508 22 281 C2C2-Dof Transcription Factor Family AT3G61850 39.643 6.15e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal4g0508 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0508 - - lang:109326143 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0583 17 4163760 4166730 Lal4g0508 4 3683890 3685172 ECH
Lal22g0568 22 3873537 3874364 Lal4g0508 4 3683890 3685172 ECH
Lal5g0049 5 538478 539173 Lal4g0508 4 3683890 3685172 ECH
Lal18g1044 18 13449850 13451997 Lal4g0508 4 3683890 3685172 ECH
Lal4g0508 4 3683890 3685172 Lal4g0508 4 3683890 3685172 ECH