Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0462 ATGGAGAGATCAAGTTCAAGTTCAAGATCATGGAAACCAGATATTGAGGTAGCACCAAATTGCCCACGTTGCTCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCACAGCCCAGATACTTCTGCAAAGGCTGCAGGCGCTATTGGACCAAAGGCGGTTCTCTCCGCAGCGTCCCAATTGGGGGTGGCTGCCGAAAGAACCGCCGTGGGAAATCGGGGAGGCATCCGCCCCAGGGCGGGTGCCACACCGTAAATGATGGGAATTCTGGTTCTGATGATAGAGATTCATCACCAGAAACCAATAACGTGTCTAATGATATAGACATGGCCCTTGTGTTTGCTAAATTCTTGAACCAAAATCCAAGTTCAGGTGAGGAGTTTGAGAGTGAGGGTAATAATAGTGGTGCATCATGTTCCAATAAATCTGCAACAAGTTCTTTGACACCAGAATTAAGTGTTGAAGCTGAGAATTATGCAGTGATGCAGCCACAGAAAAAACTATGTAATGATCCTACTGATGCAGATGCAGTGCAAATTGGTGGGGTCACTGAGGAATTGAGTTTTAGTGGAATTGATGAGTTGGAAGGATTTCTAAGTAAAGATGTGGTCCAAGATGTTCTTTGGTCTAATGATAATTGGCAACAACAACCAATGATGCAAATGCAATTGCAAGAGTTAGAGGAATCCTTGATGCCATTGAATGAAGATGGTGATCATTTTTTACCAATTAGTTCTACTATCAATTTGTTAAATGAGAGTTGGGGTAATTGGACTAGTTCCTTTGATCTTCCAACCATGGATCTCTTCTCATCAACACCTTCATCCATTTGA 843 0.4282 MERSSSSSRSWKPDIEVAPNCPRCSSTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRSVPIGGGCRKNRRGKSGRHPPQGGCHTVNDGNSGSDDRDSSPETNNVSNDIDMALVFAKFLNQNPSSGEEFESEGNNSGASCSNKSATSSLTPELSVEAENYAVMQPQKKLCNDPTDADAVQIGGVTEELSFSGIDELEGFLSKDVVQDVLWSNDNWQQQPMMQMQLQELEESLMPLNEDGDHFLPISSTINLLNESWGNWTSSFDLPTMDLFSSTPSSI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0462 280 Pfam Dof domain, zinc finger 19 73 IPR003851 GO:0003677|GO:0006355
Lal4g0462 280 ProSiteProfiles Zinc finger Dof-type profile. 19 73 IPR003851 GO:0003677|GO:0006355
Lal4g0462 280 MobiDBLite consensus disorder prediction 126 152 - -
Lal4g0462 280 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 5 240 - -
Lal4g0462 280 MobiDBLite consensus disorder prediction 64 107 - -
Lal4g0462 280 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 240 IPR045174 GO:0003700|GO:0006355
Lal4g0462 280 ProSitePatterns Zinc finger Dof-type signature. 21 57 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0462 Lal-Chr4 3253907 3254749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0462 1 125 C2C2-Dof Transcription Factor Family AT3G52440 56.489 5.47e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal4g0462 zf-Dof 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0462 - - lang:109326389 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0462 4 3253907 3254749 Lal4g0462 4 3253907 3254749 ECH
Lal17g0531 17 3710204 3711112 Lal4g0462 4 3253907 3254749 LSH