Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0409 ATGCCAAATCAAAAGGCCATTTCACAAACCATTCTAATCCTCTTCCTTTCACAAGTTCTCTTCATCAATGTAGCTCAAGTATCCTCAAAATCTACCATAGAACCTTGCACAAACTCAGACTCATGTAATGCACTCCTCGGATACACTCTCTACACTGACCTTAAAGTCTCAGAGGTAGCTTCCCTCTTCCAAATTGACCCTATTTCTCTCCTAACAGCCAATGCCATAGACATTTCTTACTCTGATGTGGAACACCACATCCTCCCTTCAAGACTGTTCCTCAAGATCCCTATCTCCTGCTCCTGTGTTGATGGCATTCGTAAATCTGTGTCCACACATTACAAGACTCGTCCATCGGATAGTCTTTCGTCGATTGCGGATTCGGTGTATGGAGGTCTTGTATCTGCTGGCCAGCTCAGGGAGGCTAATTCTATCACTGACCCTACTGTGCTTGATGTTGGGCAGAACCTTGTTGTGCCTTTGCCTTGTACTTGTTTCAATGGCACTGATAACTCTTTGCCTGCGATTTATTTGTCTTATGTGGTGAAGCAGGATGATAGTTTGGCTGCAATTGCGGCTAGGTATTTCACAACTCTTACTGATTTGATGAATGTTAATGCATTGGGAAGTACTGCTATTGCTGATGCTGATATTCTTGCTATTCCAATACCAGCTTGCGCTTCAAATTTTCCAAGATACGCCTCTGATTATGGTTTGCTTGTCCCTAATGGAAGCTATGCCATTACAGCAGGCCATTGTGTGCAGTGTAGTTGTGGACCACTAAACCTGAATTTGTATTGTATGCCAGCTTCTCTGGCTGTTTCATGCTCCAGCATGCAATGTAAAAAAAGCAATCTTATGCTTGGGAATGTTACGGTGCAACAAACTGGTGGTGGCTGCAATGTTAGTTCCTGCAATTATGATGAGCTATTCTTGAATATTAAGCTCATTCAATCTTTCTTGCAACCCTACAGGTTATCCTCGTCTCTTCAGCCTCGATGCCCAGGGCCGCAAGAATTCCCCGATCTTATAGCCCCACCTACAACTGTTACGAGAGAATCAATATTTGCACCAGCGCCAGCACCTCAGTCAGATGGAAGTGGTTTAACAACACCCAAATCCTCAGTGTTACCTTCAACCGGATTACTCCCAGGATTCTCACCTGCAAATGGCCCTATTAGTGGGATTGCTTCTGGTGCTTCTGATGCTTGCTCCTTGGTGAATCCATTACCAACCACTTCGGTATCTGCGCTTTTATTATTGTTTGTCAAGTTGATGCATCCTGCAGCATTATAA 1296 0.4398 MPNQKAISQTILILFLSQVLFINVAQVSSKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYSDVEHHILPSRLFLKIPISCSCVDGIRKSVSTHYKTRPSDSLSSIADSVYGGLVSAGQLREANSITDPTVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVKQDDSLAAIAARYFTTLTDLMNVNALGSTAIADADILAIPIPACASNFPRYASDYGLLVPNGSYAITAGHCVQCSCGPLNLNLYCMPASLAVSCSSMQCKKSNLMLGNVTVQQTGGGCNVSSCNYDELFLNIKLIQSFLQPYRLSSSLQPRCPGPQEFPDLIAPPTTVTRESIFAPAPAPQSDGSGLTTPKSSVLPSTGLLPGFSPANGPISGIASGASDACSLVNPLPTTSVSALLLLFVKLMHPAAL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0409 431 Gene3D LysM domain 106 168 IPR036779 -
Lal4g0409 431 ProSiteProfiles LysM domain profile. 112 159 IPR018392 -
Lal4g0409 431 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Lal4g0409 431 Pfam LysM domain 114 160 IPR018392 -
Lal4g0409 431 Pfam LysM domain 180 213 IPR018392 -
Lal4g0409 431 SUPERFAMILY LysM domain 178 223 IPR036779 -
Lal4g0409 431 SMART LysM_2 179 222 IPR018392 -
Lal4g0409 431 SMART LysM_2 113 160 IPR018392 -
Lal4g0409 431 CDD LysM 179 206 IPR018392 -
Lal4g0409 431 CDD LysM 112 159 IPR018392 -
Lal4g0409 431 Gene3D LysM domain 169 229 IPR036779 -
Lal4g0409 431 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 25 404 - -
Lal4g0409 431 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 25 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0409 Lal-Chr4 2842353 2845156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0409 4 405 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 65.185 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0409 - - gmx:100808966 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0409 4 2842353 2845156 Lal4g0409 4 2842353 2845156 ECH