Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0206 ATGGCGTACAACAACCATAATCACCACCTCTCTCAAAATCTCCCACTTCACCATTTCACAGACCAACAACAACAACAACAACAACTTGCTTCGGCCTCAAACCTCACCACTAAAACTGTTTCTGATCCTAACCAACCTCTCCAAACAGCACCTAATTGGCTCAACAACGCGCTTCTTCGTTCTCAATACAACAATAATAACAACAACATTAACAACAGCTCTGATTTCCACACTACCCTTGCCGTAGAACCCATCATCACCGGCGCCACGCTCTCACATGACTCTGGCGAATTGAAGGCTAACACCGGAGCAGGGAAGGAGAACGAGGCGGTGGAGGAAGGTGGTGGCGGAGAGGGATTAGTGAACTGGGAGAATGGAAAGTACAAGGCGGAGATTCTAGCTCACCCACTGTACGAACAGCTTCTGTCGGCACACGTGTCATGCTTGAGGATAGCCACGCCGGTTGACCAGTTGCCACGGATCGATGCTCAGCTTGCTCAGTCACAGAATATCGTCGCTAAGTATTCCACTTTCGGACATATGCTTGGTCATGATAACAAGGAACTCGATCACTTCTTGTCACACTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTCCATGCAATGGAGGCAGTGATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACAGGAGCAACGATGTCTGACGACGAAGATAATCAAGTCGATAGCGATGCTGATCTGTTTGACGGTGGTTTGGATGGTCATGATAGCATGGGATTTGGCCCTCTAATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAATTGAAACAGGGTTATAAGGAGAAAATTGTGGACATTAGAGAGGAAATTTTACGCAAGAGACGAGCCGGGAAACTTCCTGGTGACACTACCTCTGTTCTTAAAGCTTGGTGGCAGTCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACGGGTTTGCAACTGAAGCAGATTAATAATTGGTTCATAAATCAGAGAAAGAGGAACTGGCATAGCAATCCTTCAACTTCTACGGTCTTGAAGAACAAGCGCAAAAGAAGTAATGCAGGTGATAGCAGCGCCGATCGTTACATTTAA 1203 0.4647 MAYNNHNHHLSQNLPLHHFTDQQQQQQQLASASNLTTKTVSDPNQPLQTAPNWLNNALLRSQYNNNNNNINNSSDFHTTLAVEPIITGATLSHDSGELKANTGAGKENEAVEEGGGGEGLVNWENGKYKAEILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNIVAKYSTFGHMLGHDNKELDHFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDNQVDSDADLFDGGLDGHDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKNKRKRSNAGDSSADRYI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0206 400 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 391 - -
Lal4g0206 400 MobiDBLite consensus disorder prediction 374 400 - -
Lal4g0206 400 MobiDBLite consensus disorder prediction 95 118 - -
Lal4g0206 400 Pfam KNOX1 domain 128 169 IPR005540 GO:0003677|GO:0005634
Lal4g0206 400 Gene3D - 312 373 - -
Lal4g0206 400 SMART ELK_2 291 312 IPR005539 GO:0003677
Lal4g0206 400 CDD homeodomain 314 375 IPR001356 GO:0003677
Lal4g0206 400 MobiDBLite consensus disorder prediction 20 49 - -
Lal4g0206 400 Pfam KNOX2 domain 184 233 IPR005541 GO:0003677|GO:0005634
Lal4g0206 400 SMART KNOX1_2 126 170 IPR005540 GO:0003677|GO:0005634
Lal4g0206 400 Pfam Homeobox KN domain 331 370 IPR008422 GO:0003677|GO:0006355
Lal4g0206 400 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 36 391 - -
Lal4g0206 400 SMART HOX_1 313 378 IPR001356 GO:0003677
Lal4g0206 400 ProSiteProfiles ELK domain profile. 291 311 IPR005539 GO:0003677
Lal4g0206 400 SUPERFAMILY Homeodomain-like 313 377 IPR009057 -
Lal4g0206 400 Pfam ELK domain 291 312 IPR005539 GO:0003677
Lal4g0206 400 SMART KNOX2_2 179 234 IPR005541 GO:0003677|GO:0005634
Lal4g0206 400 ProSiteProfiles 'Homeobox' domain profile. 311 374 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0206 Lal-Chr4 1287870 1291405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0206 1 388 Homeobox Transcription Factor Family AT5G25220 64.908 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal4g0206 KNOX2 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0206 - - lang:109328229 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0206 4 1287870 1291405 Lal4g0206 4 1287870 1291405 ECH