LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal4g0130	ATGGAAGCGGGGGAAGATTGTTGTGTGAAGGTTGCGGTGCATATACGGCCACTCATCGCCGATGAGAAGCTTCAAGGCTGCAAGGATTGCGTCGCTGTCGTCCGTGGCAAGCCTCAGGTACAACTTGGCACCCACTCCTTTACATTTGATCATGTTTATGGAAGCACTGGTTCTCCCTCATGTGCCATGTTCGAAGAATGTGCTGCTCCCCTTGTTGATGGTTTGTTCCAAGGATATAATGCTACTGTTCTTGCATATGGTCAGACAGGTTCTGGGAAAACGTACACCATGGGCACAGGCTTTAAAGATGGTTATCAATCTGGAATAATACCCCAAGTTGTGAATGTTCTGTTCAACAAAATTGGTACATTAAAGCACCAGGCTGAATTTCAGTTGCATGTTTCCTTTATTGAGATTCTTAAAGAGGAAGTGAGAGACTTGTTGGATCCCTCCTCCATGAGTAAAGTAGATACTGCTAATGGACATGTAGGAAAAGTGACCTCTCCTGGGAAACCACCGATACAAATTCGCGAGACATCAAATGGTGTCATTACCCTAGCTGGATCTACAGAAGTCAGTGTTGCAACACTAAAGGAAATGGCTGCTTGCCTGGAACAAGGTTCAACGAGCAGAGCAACTGGGAGCACAAATATGAACAACCAATCCAGTCGATCTCATGCCATCTTCACTATCACATTAGAGCAAATGCGGAAGATTAATATTCCCAATGGCAGCAGTTTAAATGATACCATGAGTGAAGAGTATCTTTGTGCCAAGTTGCACTTAGTAGATCTTGCTGGATCAGAGCGAGCTAAAAGAACAGGTTCTGATGGTCTGCGTTTTAAGGAAGGGGTTCACATTAACAAAGGTCTTCTTGCACTTGGTAATGTTATTAGTGCACTTGGTGATGAAAAGAAGCGTAAGGAAGGCCTTCATGTTCCATATAGGGATAGTAAACTTACTAGGCTTTTACAGGATTCACTTGGAGGTAACAGCAAAACTGTTATGATAGCCTGCATAAGTCCAGCTGATATTAATGCTGAGGAAACCCTCAACACTCTGAAGTATGCAAATCGTGCCCGCAATATCCAAAATAAGCCTGTGGTTAATAGAGACCCGATGTCCAATGAGATGCTAAAAATGCAACAACAGCTAGAGTATTTGCAGGCAGAACTTTGTGCTCGGGCAGGTGGCTCTTCTGAGGAAGTTCAGGTCCTTAAGGAAAGGATTGCCTGGCTTGAAGCAGTTAATGAAAATCTTTGCCGTGAACTTCACGAGCACCGTAGTAGATGTTCTGTTGTCGAACAGTGTGATAAGGATGCTTATGATGGTAGCACATGCATCACAAAGGCTGACGGACTTAAGAGGAGCTTACCTATCACATGCCCTGATTATCCAATGAATGAAACTGCCGGTGATTCAAGGGAAATCGAAGAAGTAGCAAAAGAGTGGGAGCACACACTTCTGCAAAATAGTATGGACAGAGAATTGCATGAATTGAATAAACGCTTGGAGCTGAAAGAGTCTGAGATGAAGCTTTTTGGAGCACCTGATGCTGAATTACTCAAGCAGCACTTTGGAAGGAAGATCATGGAACTGGAGGATGAAAAGAGAGTTGTTCAGCGAGAGAGAGATTGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCTAATTGTGATGGACAAACCCAGAAATTAGAGGATATCCATGCCCATAAATTGAAAGCACTTGAAGCACAGATTATGGATCTGAAGAAAAAACAAGAGAGCCAGGTCCAGCTTATGAAGCAAAAGCAAAAGAGTGATGAAGCAGCAAAAAAACTACAAGATGAAATACAATCTATAAAAGCCCAAAAGGTTCAATTGCAACAAAGGATAAAACAAGAGGCAGAACAATTTCGGCTGTGGAAGGCTTCTAGAGAGAAAGAGCTTTTGCAATTAAGGAAGGAGGGGAGAAGAAATGAGTATGAAAGGCATAAGCTACAAGCTTTAAATCAGCGCCAGAAAATTGTCCTTCATAGAAAAACTGAAGAAGCTGCAATGGCCACCAAGAGGTTAAAGGAGTTGCTAGAAGCTCGTAAAACCTCCAGCCGAGACACTTTAGCTACAATGAATGGGTGTGGAACAAATGGGCAGAACAATGAGAAGTCCTTATTACGGTGGCTTGATTATGAGCTGGAAGTCATGATAAAGGAGCATGAAGTTCGTTTTGAGTATGAGAAGCAGAGCCAAGTGCGTGCTGTCCTTGCAGAGGAGTTAGCCATGCTGAAGCAAGTGAATGAGTTTACTGCTAAGGGTCTCAGTCCGCCGAGAGAAAAGAATGGGTTTGCCAGAGCATCCTCCATGTCACCAAATGCAAGAATGGCCAGAATAACTTCACTTGAGAACATGCTGAGCATATCATCTAATTCACTTGTGTCAATGGCATCTCAACTTTCCGAGGCAGAAGAACGCGAACGGGCCTTCACTAATCGTGGACGCTGGAATCATTTGCGCTCAATGGGAGAAGCCAAGATTTTGCTTCAATATATGTTTCATTCTGTTGCAGATGTTAGGTGTCAGCTTTGGGAGAGGGACACGGAGAACAGGGAAATGAAAGATCAAATCAAAGAACTTGTTGGTCTATTAAGACAAAGTGAGATGAAGAGAAAGGAAGCTGAGAAGGAGCTAAAAGTGAGAGAGCAAGTTGTTGCAAACACATTGGCTACACCAGCTTCTGAAAAATCTCCAAATTCAATGAAAAACTATGCTGAAGACATGAAGGGACCCATATCTCCAATGTCTGTACCAATACCAAAACAGCTAAAGTTTACGCCAGGGGTTGCTAATTGCTTAATGAAGGATACGGCGACATTTATAGATCAGAGTATTCGGATGGTACCCATCCAGCAGCTTTCAATGAAAAAACTAGCAACTATAGGACAAGCTTCTGGCAAGTTATGGAGGTGGAAAAGAAGTCATCACCAATGGCTACTACAGTTCAAGTGGAAGTGGCAGAAGCCATGGAGACTTTCAGAATTAATTCGACACAGTGATGAGACAGTCATGAAAGCAAGGCCACGCTCAAAGGCTTTGTCACGTACCAGGTGA	3087	0.4318	MEAGEDCCVKVAVHIRPLIADEKLQGCKDCVAVVRGKPQVQLGTHSFTFDHVYGSTGSPSCAMFEECAAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQSGIIPQVVNVLFNKIGTLKHQAEFQLHVSFIEILKEEVRDLLDPSSMSKVDTANGHVGKVTSPGKPPIQIRETSNGVITLAGSTEVSVATLKEMAACLEQGSTSRATGSTNMNNQSSRSHAIFTITLEQMRKINIPNGSSLNDTMSEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGLHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMQQQLEYLQAELCARAGGSSEEVQVLKERIAWLEAVNENLCRELHEHRSRCSVVEQCDKDAYDGSTCITKADGLKRSLPITCPDYPMNETAGDSREIEEVAKEWEHTLLQNSMDRELHELNKRLELKESEMKLFGAPDAELLKQHFGRKIMELEDEKRVVQRERDCLLAEVENLAANCDGQTQKLEDIHAHKLKALEAQIMDLKKKQESQVQLMKQKQKSDEAAKKLQDEIQSIKAQKVQLQQRIKQEAEQFRLWKASREKELLQLRKEGRRNEYERHKLQALNQRQKIVLHRKTEEAAMATKRLKELLEARKTSSRDTLATMNGCGTNGQNNEKSLLRWLDYELEVMIKEHEVRFEYEKQSQVRAVLAEELAMLKQVNEFTAKGLSPPREKNGFARASSMSPNARMARITSLENMLSISSNSLVSMASQLSEAEERERAFTNRGRWNHLRSMGEAKILLQYMFHSVADVRCQLWERDTENREMKDQIKELVGLLRQSEMKRKEAEKELKVREQVVANTLATPASEKSPNSMKNYAEDMKGPISPMSVPIPKQLKFTPGVANCLMKDTATFIDQSIRMVPIQQLSMKKLATIGQASGKLWRWKRSHHQWLLQFKWKWQKPWRLSELIRHSDETVMKARPRSKALSRTR	1028

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal4g0130	1028	Coils	Coil	403	423	-	-
	Lal4g0130	1028	Pfam	Kinesin motor domain	35	363	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lal4g0130	1028	Coils	Coil	861	895	-	-
	Lal4g0130	1028	Coils	Coil	566	631	-	-
	Lal4g0130	1028	Coils	Coil	523	557	-	-
	Lal4g0130	1028	PRINTS	Kinesin heavy chain signature	78	99	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lal4g0130	1028	PRINTS	Kinesin heavy chain signature	216	233	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lal4g0130	1028	PRINTS	Kinesin heavy chain signature	259	277	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lal4g0130	1028	PRINTS	Kinesin heavy chain signature	313	334	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lal4g0130	1028	PANTHER	CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN	2	1026	-	-
	Lal4g0130	1028	PANTHER	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	2	1026	-	-
	Lal4g0130	1028	CDD	KISc_KIF4	7	364	-	-
	Lal4g0130	1028	ProSitePatterns	Kinesin motor domain signature.	258	269	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Lal4g0130	1028	Gene3D	Kinesin motor domain	2	391	IPR036961	-
	Lal4g0130	1028	SMART	kinesin_4	6	371	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lal4g0130	1028	Coils	Coil	490	510	-	-
	Lal4g0130	1028	Coils	Coil	671	691	-	-
	Lal4g0130	1028	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	9	393	IPR027417	-
	Lal4g0130	1028	ProSiteProfiles	Kinesin motor domain profile.	8	363	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal4g0130	Lal-Chr4	799875	811321	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal4g0130	49	402	Calmodulin-binding Proteins	AT5G65930	35.674	1.94e-54	205

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal21g0213	21	1393775	1404848	Lal4g0130	4	799875	811321	LSH
	Lal8g0647	8	4560200	4572614	Lal4g0130	4	799875	811321	PCT
	Lal4g0130	4	799875	811321	Lal8g0647	8	4560200	4572614	PCT