Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0084 ATGGCTGGGTTATTCTCTTTAGGTCAAGAAAACAAGGAAGGAGAAGATAACAACAGAAATAGCTTACTCTTGTTCAGGAACGAAGAGATCTACAACAAAGGGTTTGAGATATGGCCACAGTCTTATCATCAACAACAAAGCTTGAACAACTACTACTCATCATATGGTGTGGGTCCTAGTCGAAGGAACTCAATACCCTCCTCCAACGTTGGTTACGACGACGTTTCGCTATCTGATGAGTCAACAAGATTTGGACTAACAGTAATGAGAACAGGTGGAAGTAGCAGTAGTGGAATTAACTGTCAGGACTGTGGGAACCATGCTAAGAAAGAGTGTGTTCATCTGAGATGCAGGACTTGTTGTAAGAGTCGAGGGTTTCAGTGCCAAACTCATGTTAAGAGCACTTGGGTACCCGCTGCTAAACGCCGTGAACGCCAACAACACAACACTTCTAAACGACATAGACAGCATCAAGGTTTACAATTTCCACCACATGTCACCACCACAGGGTTGGAAGTGGGAGTACAATTTCCACCTGAAGTGAACTCAACAGCGGTGTTTCGATGTGTAAAAGTAACTGCAGTAGATACTCCAGAAGAGCAATACGCGTATCAAGCCGCTGTCAACATCAGAGGGCACGTTTTCAAGGGAATTCTCTATGATCAAGGACCCGAAGGTTCTTACACCAATATTGAGGGTTCATCTGGTGGAGTAGGAGGAGGAGGAGTTGAAGCCCAACAACAAATTGGTCTACTAACTTCTCCAACTACAGTTACAACCACTGGGAATCTTTTTGATCCTTCTTCACTTTACCCTCCTCCTCTTATGAATGCCTTCATGACTGGTACGCAGTTTTTCCCACCCCCAAGATCCTAA 876 0.4441 MAGLFSLGQENKEGEDNNRNSLLLFRNEEIYNKGFEIWPQSYHQQQSLNNYYSSYGVGPSRRNSIPSSNVGYDDVSLSDESTRFGLTVMRTGGSSSSGINCQDCGNHAKKECVHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHNTSKRHRQHQGLQFPPHVTTTGLEVGVQFPPEVNSTAVFRCVKVTAVDTPEEQYAYQAAVNIRGHVFKGILYDQGPEGSYTNIEGSSGGVGGGGVEAQQQIGLLTSPTTVTTTGNLFDPSSLYPPPLMNAFMTGTQFFPPPRS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0084 291 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 289 IPR007818 GO:0003700|GO:0006355
Lal4g0084 291 Pfam Domain of unknown function (DUF702) 98 225 - -
Lal4g0084 291 MobiDBLite consensus disorder prediction 142 164 - -
Lal4g0084 291 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 176 224 IPR006511 -
Lal4g0084 291 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 100 142 IPR006510 -
Lal4g0084 291 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0084 Lal-Chr4 507223 509833 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lal4g0084 DUF702 1.2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0084 4 507223 509833 Lal1g0204 1 1221889 1223522 ECH
Lal4g0084 4 507223 509833 Lal4g0084 4 507223 509833 ECH
Lal21g0130 21 904959 907545 Lal4g0084 4 507223 509833 LSH
Lal8g0554 8 3848411 3850205 Lal4g0084 4 507223 509833 PCT
Lal25g0538 25 3905058 3907407 Lal4g0084 4 507223 509833 PCT
Lal10g0869 10 16198212 16199850 Lal4g0084 4 507223 509833 PCT
Lal4g0084 4 507223 509833 Lal8g0554 8 3848411 3850205 PCT
Lal4g0084 4 507223 509833 Lal25g0538 25 3905058 3907407 PCT
Lal4g0084 4 507223 509833 Lal10g0869 10 16198212 16199850 PCT