Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0078 ATGGGTTTGAGTTCTAAGCAGGTTTCTAATAGAGGGGTTGATTGGAACCAAACCTTGTTGGAAGCACAAAACTTGGAGCTACCACAGCCACATAATCCAATGAGGAAACAACATCAACAAAATCAGCAACCAGAGGTTGTGAAATGCCCAAGATGTGACTCAACAAACACCAAGTTTTGTTACTACAACAACTACAACAAGTCTCAGCCGCGCCATTTCTGCAGATCTTGTAAAAGGCACTGGACTAAAGGTGGAATTCTAAGAAATGTTCCTGTTGGTGGTGGTGGCAAAAAGAACAAGAGAGTAAAAAGTTCAACCTCAACCTCACCTACAAACACCACTTCAATTACCACAACAAGTGTTCCTTCTCTTGAAGTGGATCATGATCATGATCATGATCATGATCACAAAACCATACCTTCCACTCTTTACCAATCTTTGATTTGTCCAACTACAAGGGAATCAGAAGTTAAAGAGTATGGTATAGGTAATGGAATCTTTCTGAGTTCAACTATGCCTCTTACACATAACCAAGGCATGATCTTCCCTTTCTCAACTACCTCAAGCTCTTTTGACACAAACCCATGTTCTGTATCAACATCTTTCCCATCCTCCAATGTTTATAACTACGGAGAAGAATTTAAAACAATGGAGGAGTCAACCATCAACAGCATGATGCCTATCACTAGTGGTACTAACACACAACAATGGGAGATACCTACAACAAGTACTGGCATGGGAATGTCAAACTACTGGAGTTGGGAAGATATTGATTCATTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATGTCAAACCCTGA 831 0.4031 MGLSSKQVSNRGVDWNQTLLEAQNLELPQPHNPMRKQHQQNQQPEVVKCPRCDSTNTKFCYYNNYNKSQPRHFCRSCKRHWTKGGILRNVPVGGGGKKNKRVKSSTSTSPTNTTSITTTSVPSLEVDHDHDHDHDHKTIPSTLYQSLICPTTRESEVKEYGIGNGIFLSSTMPLTHNQGMIFPFSTTSSSFDTNPCSVSTSFPSSNVYNYGEEFKTMEESTINSMMPITSGTNTQQWEIPTTSTGMGMSNYWSWEDIDSLVSTDLNVPWDDSDVKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0078 276 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Lal3g0078 276 PANTHER OS06G0284500 PROTEIN 30 226 - -
Lal3g0078 276 MobiDBLite consensus disorder prediction 124 138 - -
Lal3g0078 276 MobiDBLite consensus disorder prediction 88 138 - -
Lal3g0078 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 226 IPR045174 GO:0003700|GO:0006355
Lal3g0078 276 MobiDBLite consensus disorder prediction 100 123 - -
Lal3g0078 276 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Lal3g0078 276 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0078 Lal-Chr3 469391 470221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0078 31 114 C2C2-Dof Transcription Factor Family AT1G51700 60.000 3.79e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal3g0078 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0078 - - gmx:778119 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1750 5 19528627 19531253 Lal3g0078 3 469391 470221 LSH
Lal15g0600 15 4170051 4170907 Lal3g0078 3 469391 470221 PCT
Lal23g0957 23 11639825 11640679 Lal3g0078 3 469391 470221 PCT
Lal3g0078 3 469391 470221 Lal15g0600 15 4170051 4170907 PCT
Lal3g0078 3 469391 470221 Lal23g0957 23 11639825 11640679 PCT