Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1740 ATGGAAAATCAATTCTTTATCAATCCTCAAATGTGGCAATCACTACCATCATCACCATCTACTATGGATGTTCAACAAGCAACAACAGTTTTGAATAATTCTTCATCTGATCAAACCCAAAATTGTTTTTACAATAACCAAACATGGGACAAGTCAAGTGAACAAAACAACAACCTTCAGTTTGATTCAGCACTGAGTTCAATGGTGTCTTCTCCTGCAGGTTCAAATTCCAACATGTCAAGTGAAAATTTTGTCATTAAGGAACTCATTGGAAAACTAGGAAACATTGGTGGTTGTAATAATGATGAGATCTTACCTCATTCTCAATACCAATCTTTTGTTACTGCATCTTATGCTAATAAGAATAACAACAACAATAGCACTAATACTTCATGTTATAGCACCCCTTTGAATTCTCCTCCTAAGATGAACATCATCAACAACAACAACAACAACAATTTGATGGTAGAGAATTTACATAGTTTGGGAAAAACAATGATGGGTTTGAATTCTTCTTCTACTGTGGCTGAGTTTTCAGCTGATCCTGGCTTTGCTGAAAGGGCTGCAAAGTTTTCTTGTTTTGGAAGTAAGAGTTTCAATGGTAGAAAAACTCAATTGGGGTTGAACAATAATCATGAAATGAGTCAAAGATCTAATCTTTTGATGGAAAATGTGAAACTCATCACTAGAGTATCAAGTAGTCCATCACTAAAAGTTCTTGGAATTGGATCTCAAATGGGTATTCAAGAAAACAAGAATTCTCCAATGGAAGTGGTTAATTCTCAAGAAGAATCTACAATCTCTCAGCAAAATCCAAATGCTATGAATTCTAGGAAAAGAAAAAATTATTCTAAAGGAAAAGCTAAAGAAACTTCAACCTCTGCTATGGGTATTTCACTTCATGCTCATGAAGCTAGTGAAGACTCAAATGCAAAACGTTACAAGTCAAATGAGGGTGATGGAAATGAAAATGGATCTTTGAAAGAAGAAGAAGAGTCCAAAGAAGGTGCTAGTAATGGAAGTGAAGATAAACATAAAAAGGGTAACTCAAAACATTCTGAACCTCCAAAGGATTATATTCATGTTAGAGCAAGAAGGGGTCAAGCCACTGATAGCCATAGTCTTGCAGAAAGAGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAAGTTGCAATAAGGTAATTGGAAAAGCACTTATGTTAGATGAAATTATAAACTATGTTCAATCTTTACAACGTCAAGTTGAGTTCCTTTCTATGAAATTGGCTACTGTTAACACCAGAATGGATTTTAATATTGAGAATATGATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAACATTGCCACTAGATTCCTCATCTGAAGGCTTTTATGGGCAACAACAACCCCAAAACTCAACAATCAACAATATTGTTTTAGATGATAATCTGCACCAAAATATTGCTATGCAGCTATCTTCCCTTGATGGATTTAGTGAAGGTGGCTCTCAGTATCCAGTAGCATTCTCTGAGGGTGACCTCAATGCCATTGTTCAAATGGGATTTGGCCAAACTACAAATAGGAAATCACTACAATCACATAGTTTCAAAGGCTCAAATCAAGCACACCTATGA 1650 0.3545 MENQFFINPQMWQSLPSSPSTMDVQQATTVLNNSSSDQTQNCFYNNQTWDKSSEQNNNLQFDSALSSMVSSPAGSNSNMSSENFVIKELIGKLGNIGGCNNDEILPHSQYQSFVTASYANKNNNNNSTNTSCYSTPLNSPPKMNIINNNNNNNLMVENLHSLGKTMMGLNSSSTVAEFSADPGFAERAAKFSCFGSKSFNGRKTQLGLNNNHEMSQRSNLLMENVKLITRVSSSPSLKVLGIGSQMGIQENKNSPMEVVNSQEESTISQQNPNAMNSRKRKNYSKGKAKETSTSAMGISLHAHEASEDSNAKRYKSNEGDGNENGSLKEEEESKEGASNGSEDKHKKGNSKHSEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPSCNKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRMDFNIENMISKDIFQSNNSLAHPTLPLDSSSEGFYGQQQPQNSTINNIVLDDNLHQNIAMQLSSLDGFSEGGSQYPVAFSEGDLNAIVQMGFGQTTNRKSLQSHSFKGSNQAHL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1740 549 Gene3D - 365 441 IPR036638 GO:0046983
Lal2g1740 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 437 IPR036638 GO:0046983
Lal2g1740 549 Coils Coil 415 435 - -
Lal2g1740 549 MobiDBLite consensus disorder prediction 251 279 - -
Lal2g1740 549 PANTHER BHLH TRANSCRIPTION FACTOR 23 546 - -
Lal2g1740 549 CDD bHLH_AtBPE_like 358 441 - -
Lal2g1740 549 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 546 IPR024097 GO:0006355
Lal2g1740 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 368 418 IPR011598 GO:0046983
Lal2g1740 549 MobiDBLite consensus disorder prediction 305 358 - -
Lal2g1740 549 MobiDBLite consensus disorder prediction 251 358 - -
Lal2g1740 549 SMART finulus 374 424 IPR011598 GO:0046983
Lal2g1740 549 Pfam Helix-loop-helix DNA-binding domain 372 419 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1740 Lal-Chr2 19755181 19758709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1740 1 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.121 7.47e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal2g1740 HLH 7.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1740 - - gmx:100787699 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1740 2 19755181 19758709 Lal1g2129 1 23383697 23387283 LSH
Lal2g1740 2 19755181 19758709 Lal14g0190 14 2122638 2125302 PCT
Lal14g0190 14 2122638 2125302 Lal2g1740 2 19755181 19758709 PCT