Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0885 ATGAATCAGCTGGAAGAGAGTTTCAGTGAGGTTGGACCTGTTAGACGTTGCTTTATGGTCACACAGAAAGGCTCAGCTCACCATCGTGGCTTTGGTTATGTTCAATTTTTAGAACTGATCGCTGCCATCTTTAGTGCTGTTGAGGAAGATGCTAACCGTGCTATTGAGCTGAAGAATGGTTCATCTGTTGGGGGTCGGAAAATTGCAGTGAAGCACGCAATGCCTCGTCCTACCCGTGAGGAACGGCAATCAAAACCAAATCAAGTGGGTAAGACAGATGGCCACACCGAGTCTAAAAATGATGATAAAGATGGCAGATCTTCTGAAGCAGATAAGCCTGTATTAGTTTTGAAGGAAGACGAAGTACAAGTTTCAAAGAAACCAAAAAATTCAAGGAAGCCCACAGAAATGAGAAAAGCAGATCTTTGCAATGATATACCAGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCAAGAATTCTGATATGGCTGAAGATGTCCATCGCCAAGCCAAAGAGATTGGCACTGTATGTTCTATTAAGTATCCACTTCCGAGGAAAGATCTTGAACATGGTCTCCTGCAAGATGGCTGTATTTTGGAGGCTTCTGCTGTACTTTATACAAGTGTAAAATTAGCCCGAGCTGCTGTTGCATCATTGCATAAAAAGGAGATAGGTGGGGGCACTGTTTGGGCACGACAACTGGGTGGAGAGGGATCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAGAGATGATGAAATAAGAAATATTTTTGCATCTGCAGGGTATGTTTGGGATGTATTTATCCCACGAAAATCAGACACAGGTCTCTCCAAGGGTTTTGCATTTGTAAAATTCACGTGCAAGCAAGATGCGGAAAATGCCATTCAAAAGCTCAATGGATCTACATTCTCAAAACGGCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAATAGTGATGCAAATGCTGCTCTTGCTTCAGAAGAAGGACAAGAGGTGAAAGATGAAGATGGTAGTGCTACTGAGAGTGATGGAGATGACAGTGATGTAGATTCATCTAGTGCTGTGGAAGAGGATGGTGTTCCTTCTGAAATTGATTTTGATAAGGAAGCAGACATTGCAAGGAAGGTTCTTAGCAACTTGATTACGTCCTCGACCAAAGGAACATTTGTAGATAATGAGTATGCGTTGACAGAAATCGAGGAGCCAAGATCCGATGAAATTGTTAAGGATGCAGATAATAAAGCATCTAATGAATCTGAAAAGGTTTCTGATGTTTCTAAGCTTGAAATCTCCAACAAAAGCAAGTTATCAAATCCCAAGCAAACAGAAGAAGCTGATTTGCAGAGAACAGTTTTCATAAACAATCTTCCTTTTGATTGTGACAATGATGAAGTGAAGCAACGTTTTTCTGGATTTGGGGAAGTGGAATACTTTGCTCCGGTTCTCCACCAAGTGACCAAGCGACCAAGAGGAACTGGTTTTCTTAAGTTTAAAACCATAGAAGCAGCTGATGCTGCAATTTCAGCGGCCAGTGCTGCTTCTGGCATGGGTATTCTACTGAAAGGTAGGCCATTAAAAGTTTTGAAGGCTTTGGATAAAAAATCAGCTCAGGACAAGGAAGTGGAGAAAGCGAAAAATGAGATTCAAGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTCATTGTTGAGGGAACACCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAAACAAAGCTTCAATCACCAAATTTCCATGTTTCAACAACTAGGCTTATTATCTACAACTTGCCAAAGTCAATGTCTGAAAAAGAACTGAAGAAGCTTTGCATTGATGCAGTCAAATCTAAAGCTACCAAGCAAAAACCTATGGTTCGGCAGATAAAGTTCTTGAAAGATGGAAGGAAAGGAAATGCTGTTCCAGAACGCTATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAACATGCTCTTGTGGCTTTGAGAGTACTTAACAACAATCCTGAAACTTTCAATTCTGAACATCGGCCGATTGTGGAGTTTGCTCTTGATAATGTTCAAACATTGAAACTTCGTAAGGAAAAGCTACAATATCAGCAGCAAGCTCCTCGTGATGACAACGATGGCAGGGAAAATGCTGAACCCGACAAAGAACAAGGTCACACACATACCACGGACAGAAAACGAAAATCTCAAGAGGATGGCAAACCTGTGGCTAAGGAGTCCACAACGAATACAAATGGTGAATCAAGTGGTACAGTGGCAAGTGGAAAATTCACTGAAGAACACAAATTCAAAAGACAGAAAGGCAACAATAAGAATAAAAGTGCTAAAGAGTCTCCACTAAAACAAAATTCAGATGCCTTATCCAGAAAGCCAAAGACCGTAAAAGGCGTCGAGAATCGCGGTAATGCATCACATGAAGCTCAAAACACTGCTACCACTGATACCAATAGAGTAAGGACAGGAAAAAAAGTTGATGTTGGATTTGGAAAAAGGAAGATGCAAAACCAAGAAGAGCCGGCGCAAGATGCTTCAAGGAAACGTTCTAAAAAGAAGAAAGGTCCAGTAGGGAAAGAGGCAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACATAAAGGTTCTCAAGGGAATGATGGTGACAAAAAACCTTCCAGACAGCTTAGGAAATGGTTTGAGTAA 2799 0.4141 MNQLEESFSEVGPVRRCFMVTQKGSAHHRGFGYVQFLELIAAIFSAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPTREERQSKPNQVGKTDGHTESKNDDKDGRSSEADKPVLVLKEDEVQVSKKPKNSRKPTEMRKADLCNDIPDEGGCSEKQRVARTVIFGGLKNSDMAEDVHRQAKEIGTVCSIKYPLPRKDLEHGLLQDGCILEASAVLYTSVKLARAAVASLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKARDDEIRNIFASAGYVWDVFIPRKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSTFSKRLIAVDWAVPKKIFNSDANAALASEEGQEVKDEDGSATESDGDDSDVDSSSAVEEDGVPSEIDFDKEADIARKVLSNLITSSTKGTFVDNEYALTEIEEPRSDEIVKDADNKASNESEKVSDVSKLEISNKSKLSNPKQTEEADLQRTVFINNLPFDCDNDEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTIEAADAAISAASAASGMGILLKGRPLKVLKALDKKSAQDKEVEKAKNEIQDHRNLYLAKEGLIVEGTPAAEGVSASDMLKRQELERKKKTKLQSPNFHVSTTRLIIYNLPKSMSEKELKKLCIDAVKSKATKQKPMVRQIKFLKDGRKGNAVPERYSRGVAFVEFSEHQHALVALRVLNNNPETFNSEHRPIVEFALDNVQTLKLRKEKLQYQQQAPRDDNDGRENAEPDKEQGHTHTTDRKRKSQEDGKPVAKESTTNTNGESSGTVASGKFTEEHKFKRQKGNNKNKSAKESPLKQNSDALSRKPKTVKGVENRGNASHEAQNTATTDTNRVRTGKKVDVGFGKRKMQNQEEPAQDASRKRSKKKKGPVGKEAVDKLDMLIEQYRSKFSHKGSQGNDGDKKPSRQLRKWFE 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0885 932 Coils Coil 547 574 - -
Lal2g0885 932 Gene3D - 411 567 IPR012677 -
Lal2g0885 932 MobiDBLite consensus disorder prediction 73 139 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 913 932 - -
Lal2g0885 932 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 469 733 - -
Lal2g0885 932 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 3 385 - -
Lal2g0885 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 621 717 IPR000504 GO:0003723
Lal2g0885 932 CDD RRM2_RBM28_like 255 331 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 425 446 - -
Lal2g0885 932 Gene3D - 1 111 IPR012677 -
Lal2g0885 932 Gene3D - 241 370 IPR012677 -
Lal2g0885 932 MobiDBLite consensus disorder prediction 853 880 - -
Lal2g0885 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 332 IPR000504 GO:0003723
Lal2g0885 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 325 IPR000504 GO:0003723
Lal2g0885 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 68 IPR000504 GO:0003723
Lal2g0885 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 530 IPR000504 GO:0003723
Lal2g0885 932 Gene3D - 620 715 IPR012677 -
Lal2g0885 932 MobiDBLite consensus disorder prediction 771 790 - -
Lal2g0885 932 SMART rrm1_1 1 71 IPR000504 GO:0003723
Lal2g0885 932 SMART rrm1_1 470 548 IPR000504 GO:0003723
Lal2g0885 932 SMART rrm1_1 255 328 IPR000504 GO:0003723
Lal2g0885 932 SMART rrm1_1 622 713 IPR000504 GO:0003723
Lal2g0885 932 SUPERFAMILY RNA-binding domain, RBD 3 240 IPR035979 GO:0003676
Lal2g0885 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 75 IPR000504 GO:0003723
Lal2g0885 932 CDD RRM4_RBM28_like 621 718 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 66 139 - -
Lal2g0885 932 PANTHER RNA BINDING PROTEIN 3 385 - -
Lal2g0885 932 PANTHER RNA BINDING PROTEIN 469 733 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 889 906 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 729 770 - -
Lal2g0885 932 SUPERFAMILY RNA-binding domain, RBD 250 334 IPR035979 GO:0003676
Lal2g0885 932 SUPERFAMILY RNA-binding domain, RBD 469 699 IPR035979 GO:0003676
Lal2g0885 932 Coils Coil 712 732 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 837 852 - -
Lal2g0885 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 552 IPR000504 GO:0003723
Lal2g0885 932 MobiDBLite consensus disorder prediction 792 809 - -
Lal2g0885 932 CDD RRM3_RBM28_like 469 550 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 729 932 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 810 824 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 345 384 - -
Lal2g0885 932 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0885 Lal-Chr2 5771862 5780191 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0885 2 5771862 5780191 Lal9g0613 9 4159214 4160963 LSH